RNA–Protein interactions for RNA: ENST00000425428.6

CD44-207, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,768 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-207ENST00000425428 C5orf42Q9H799 3197 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 C5orf60A6NFR6 353 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 OTOL1A6NHN0 477 aaPredicted RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 J3KR12 359 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 KCNK1O00180 336 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 FANCGO15287 622 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 SYNCRIPO60506 623 aaKnown RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 RNASEH1O60930 286 aaKnown RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 ANXA9O76027 345 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 KRT14P02533 472 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 ADCY8P40145 1251 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 SOX9P48436 509 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 IFI35P80217 286 aaPredicted RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 MRPS21P82921 87 aaKnown RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 CALCOCO2Q13137 446 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 GEN1Q17RS7 908 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 FUT11Q495W5 492 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 HSF5Q4G112 596 aaPredicted RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 TEX44Q53QW1 395 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 KIAA0907Q7Z7F0 614 aaPredicted RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 C12orf40Q86WS4 652 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 CHPFQ8IZ52 775 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 SYNPOQ8N3V7 929 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 ALLCQ8N6M5 410 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 PCDH20Q8N6Y1 951 aaKnown RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 ZNF513Q8N8E2 541 aaPredicted RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 NETO2Q8NC67 525 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 ISG20Q96AZ6 181 aaKnown RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 GDAP1L1Q96MZ0 367 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 AGAP3Q96P47 875 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 HERPUD2Q9BSE4 406 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 NOL6Q9H6R4 1146 aaKnown RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 L2HGDHQ9H9P8 463 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 NT5MQ9NPB1 228 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 SCUBE2Q9NQ36 999 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 RSPH14Q9UHP6 348 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 CLEC4EQ9ULY5 219 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 HS3ST2Q9Y278 367 aa10.28□□□□□ -0.76
CD44-207ENST00000425428 AAR2Q9Y312 384 aaKnown RBP10.28□□□□□ -0.76
CD44-207ENST00000425428 A0A0A0MRY4 1105 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 BNIP3LO60238 219 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 SNAP91O60641 907 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 ATG13O75143 517 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 GCATO75600 419 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 TMCC1O94876 653 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 ALADP13716 330 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 FDFT1P37268 417 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 KCNJ1P48048 391 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 SFSWAPQ12872 951 aaKnown RBP10.27□□□□□ -0.77
CD44-207ENST00000425428 SIX1Q15475 284 aaPredicted RBP10.27□□□□□ -0.77
CD44-207ENST00000425428 OASLQ15646 514 aaKnown RBP10.27□□□□□ -0.77
CD44-207ENST00000425428 TMEM196Q5HYL7 178 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 RALGPS1Q5JS13 557 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 LINGO4Q6UY18 593 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 ADIPOR2Q86V24 386 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 NDUFAF2Q8N183 169 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 SH2D3CQ8N5H7 860 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 USP33Q8TEY7 942 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 UBXN4Q92575 508 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 CHFRQ96EP1 664 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 RPL10LQ96L21 214 aaKnown RBP10.27□□□□□ -0.77
CD44-207ENST00000425428 SPATA13Q96N96 652 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 PCDH9Q9HC56 1237 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 NDRG2Q9UN36 371 aaKnown RBP10.27□□□□□ -0.77
CD44-207ENST00000425428 STARD13Q9Y3M8 1113 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 OR51B4Q9Y5P0 310 aa10.27□□□□□ -0.77
CD44-207ENST00000425428 EDDM13A0A1B0GTR0 161 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP10.26□□□□□ -0.77
CD44-207ENST00000425428 EFCAB8A8MWE9 144 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 PDE2AO00408 941 aaPredicted RBP10.26□□□□□ -0.77
CD44-207ENST00000425428 SERPINF2P08697 491 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 MCM3P25205 808 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 NUMBP49757 651 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 VASPP50552 380 aaPredicted RBP10.26□□□□□ -0.77
CD44-207ENST00000425428 SEC13P55735 322 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ARF5P84085 180 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 NSUN2Q08J23 767 aaKnown RBP eCLIP10.26□□□□□ -0.77
CD44-207ENST00000425428 CCDC15Q0P6D6 951 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 UBXN2BQ14CS0 331 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 DLG2Q15700 870 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 EOGTQ5NDL2 527 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ANKRD20A2Q5SQ80 823 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ANKRD20A1Q5TYW2 823 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ANKRD20A3Q5VUR7 823 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 LEKR1Q6ZMV7 388 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ARHGAP36Q6ZRI8 547 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 SIX5Q8N196 739 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 MMGT1Q8N4V1 131 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 OR52K2Q8NGK3 314 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 CYB5D2Q8WUJ1 264 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 MAML1Q92585 1016 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 SLCO2A1Q92959 643 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 ALG14Q96F25 216 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 PSKH2Q96QS6 385 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 UHRF1Q96T88 793 aaPredicted RBP10.26□□□□□ -0.77
CD44-207ENST00000425428 FSD1LQ9BXM9 530 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 F5P12259 2224 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 A0A1W2PQ67 120 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 KANSL1LA0AUZ9 987 aa10.26□□□□□ -0.77
CD44-207ENST00000425428 TARSL2A2RTX5 802 aaKnown RBP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms