RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 NME5P56597 212 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 SURF1Q15526 300 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 GLRA4Q5JXX5 417 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 SPANXN3Q5MJ09 141 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 BSPRYQ5W0U4 402 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 CYP2R1Q6VVX0 501 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 CDAN1Q8IWY9 1227 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 TERB1Q8NA31 727 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 COLGALT1Q8NBJ5 622 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 ACVR1CQ8NER5 493 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 HMGCLL1Q8TB92 370 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 FAM110BQ8TC76 370 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 TRUB1Q8WWH5 349 aaKnown RBP10.87□□□□□ -0.67
USP54-204ENST00000422491 ACDQ96AP0 544 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 FBXL8Q96CD0 374 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 TMEM176AQ96HP8 235 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 APBA2Q99767 749 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 TCHPQ9BT92 498 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 TDRD1Q9BXT4 1180 aaKnown RBP10.87□□□□□ -0.67
USP54-204ENST00000422491 CACNA2D2Q9NY47 1150 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 NCKIPSDQ9NZQ3 722 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 ERGIC3Q9Y282 383 aa10.87□□□□□ -0.67
USP54-204ENST00000422491 SNAP91O60641 907 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 SUPT20HL2P0C7V6 817 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 CYP3A5P20815 502 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 GRM5P41594 1212 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 ABCG1P45844 678 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 CSRP3P50461 194 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 NAGLUP54802 743 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 CD300CQ08708 224 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 PPIL2Q13356 520 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 DPYSL2Q16555 572 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 SUPT20HL1Q3ZLR7 823 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 ZNF667Q5HYK9 610 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 ERMP1Q7Z2K6 904 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 EPHX4Q8IUS5 362 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 PELI3Q8N2H9 469 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 TMEM130Q8N3G9 435 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 SLC15A4Q8N697 577 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 PACRGLQ8N7B6 248 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 PPWD1Q96BP3 646 aaKnown RBP10.86□□□□□ -0.67
USP54-204ENST00000422491 TCF12Q99081 682 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 AGAP2Q99490 1192 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 EFHD1Q9BUP0 239 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 ADI1Q9BV57 179 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 MAGEB5Q9BZ81 275 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 GBA2Q9HCG7 927 aaPredicted RBP10.86□□□□□ -0.67
USP54-204ENST00000422491 ARMC1Q9NVT9 282 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 HESX1Q9UBX0 185 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 SIX4Q9UIU6 781 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 MID2Q9UJV3 735 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 MFHAS1Q9Y4C4 1052 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 MGAMO43451 1857 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 ESRRBO95718 433 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 NPR1P16066 1061 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 GTF2A2P52657 109 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 NR1D2Q14995 579 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 CYP2A13Q16696 494 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 RGS21Q2M5E4 152 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 SLC36A3Q495N2 470 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 INTS11Q5TA45 600 aaKnown RBP10.86□□□□□ -0.67
USP54-204ENST00000422491 EGFLAMQ63HQ2 1017 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 NCBP2-AS2Q69YL0 99 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 CCDC80Q76M96 950 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 HACE1Q8IYU2 909 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 SCAIQ8N9R8 606 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 KDM1BQ8NB78 822 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 RDH11Q8TC12 318 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 KHSRPQ92945 711 aaKnown RBP eCLIP10.86□□□□□ -0.67
USP54-204ENST00000422491 PBXIP1Q96AQ6 731 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 MCMBPQ9BTE3 642 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 MUC3BQ9H195 1237 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 CCDC68Q9H2F9 335 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 SPAG4Q9NPE6 437 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 B3GNT3Q9Y2A9 372 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 SLC30A1Q9Y6M5 507 aa10.86□□□□□ -0.67
USP54-204ENST00000422491 IQCA1LA6NCM1 817 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 SDHDO14521 159 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 B4GALT4O60513 344 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 CABYRO75952 493 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 TNNC2P02585 160 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 APOA4P06727 396 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 MERTKQ12866 999 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 NFATC3Q12968 1075 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 BAATQ14032 418 aaPredicted RBP10.85□□□□□ -0.67
USP54-204ENST00000422491 REP15Q6BDI9 236 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 FAM117BQ6P1L5 589 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 OLFML1Q6UWY5 402 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 TMEM110Q86TL2 294 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 CBR4Q8N4T8 237 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 CANT1Q8WVQ1 401 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 FAM151AQ8WW52 585 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 ANKRD36BP1Q96IX9 119 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 C1QTNF1Q9BXJ1 281 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 MRPL4Q9BYD3 311 aaKnown RBP10.85□□□□□ -0.67
USP54-204ENST00000422491 POLR1BQ9H9Y6 1135 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 RIC8BQ9NVN3 520 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 TMEM9Q9P0T7 183 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 GTF2IRD1Q9UHL9 959 aa10.85□□□□□ -0.67
USP54-204ENST00000422491 MAFBQ9Y5Q3 323 aaPredicted RBP10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 59.2 ms