RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CCDC195A0A1B0GUA6 201 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 BMP15O95972 392 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 CHEK2O96017 543 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 SPATA31D3P0C874 917 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 MYL4P12829 197 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 PTMSP20962 102 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 MUTP22033 750 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 CD52P31358 61 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 YWHABP31946 246 aaKnown RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 NLRP11P59045 1033 aaKnown RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 MGAT3Q09327 533 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 TFDP1Q14186 410 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 GEN1Q17RS7 908 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 RAP1GAP2Q684P5 730 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 TMEM108Q6UXF1 575 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 SPATA31D4Q6ZUB0 917 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 ZNF410Q86VK4 478 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 PALM2Q8IXS6 379 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 OR1N1Q8NGS0 311 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 PSPC1Q8WXF1 523 aaKnown RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 TOP1MTQ969P6 601 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 TMEM41AQ96HV5 264 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 ADAM2Q99965 735 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 KRTAP3-1Q9BYR8 98 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 CXorf36Q9H7Y0 433 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 TUFT1Q9NNX1 390 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 DACT1Q9NYF0 836 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 DNMT3BQ9UBC3 853 aaKnown RBP6.86□□□□□ -1.31
USP40-202ENST00000409945 SLC39A10Q9ULF5 831 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 PADI3Q9ULW8 664 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 LRCH1Q9Y2L9 728 aa6.86□□□□□ -1.31
USP40-202ENST00000409945 TNFRSF6BO95407 300 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 GPANK1O95872 356 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 VTNP04004 478 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 XRCC6P12956 609 aaKnown RBP eCLIP6.85□□□□□ -1.31
USP40-202ENST00000409945 U2AF2P26368 475 aaKnown RBP eCLIP6.85□□□□□ -1.31
USP40-202ENST00000409945 IL1R2P27930 398 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 DEKP35659 375 aaKnown RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 VIPR2P41587 438 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 PTDSS1P48651 473 aaKnown RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 ALDH9A1P49189 494 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 CLCN3P51790 818 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 DEFB103AP81534 67 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 CYP4A11Q02928 519 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 MXD4Q14582 209 aaPredicted RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 STARD3Q14849 445 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 UGCGQ16739 394 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 KRT79Q5XKE5 535 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 LRRC71Q8N4P6 559 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 NKAPQ8N5F7 415 aaKnown RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 MYCT1Q8N699 235 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 ANKRD42Q8N9B4 389 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 ZNF527Q8NB42 609 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 MAFAQ8NHW3 353 aaPredicted RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 ARNTL2Q8WYA1 636 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 RSPH1Q8WYR4 309 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 HAS1Q92839 578 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 PNKPQ96T60 521 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 SMOQ99835 787 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 EIF2AK1Q9BQI3 630 aaKnown RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 HEPHQ9BQS7 1158 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 TTYH1Q9H313 450 aaPredicted RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 OBP2BQ9NPH6 170 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 ANKEF1Q9NU02 776 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 SUCLA2Q9P2R7 463 aaPredicted RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 LRWD1Q9UFC0 647 aa6.85□□□□□ -1.31
USP40-202ENST00000409945 LAMA2P24043 3122 aaKnown RBP6.85□□□□□ -1.31
USP40-202ENST00000409945 KRTAP23-1A1A580 65 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 VPS37CA5D8V6 355 aaPredicted RBP6.84□□□□□ -1.31
USP40-202ENST00000409945 CLCA1A8K7I4 914 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 LGALS16A8MUM7 142 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 TOR1BO14657 336 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 RRP9O43818 475 aaKnown RBP6.84□□□□□ -1.31
USP40-202ENST00000409945 GATA3P23771 443 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 TECP42680 631 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 BTKQ06187 659 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 ZNF844Q08AG5 666 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 BTG3Q14201 252 aaPredicted RBP6.84□□□□□ -1.31
USP40-202ENST00000409945 CTTNQ14247 550 aaKnown RBP6.84□□□□□ -1.31
USP40-202ENST00000409945 PDIA5Q14554 519 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 IQCB1Q15051 598 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 SLC44A4Q53GD3 710 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 EARS2Q5JPH6 523 aaKnown RBP6.84□□□□□ -1.31
USP40-202ENST00000409945 SPOUT1Q5T280 376 aaKnown RBP6.84□□□□□ -1.31
USP40-202ENST00000409945 CRTC1Q6UUV9 634 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 LIN28BQ6ZN17 250 aaKnown RBP eCLIP6.84□□□□□ -1.31
USP40-202ENST00000409945 SLC24A5Q71RS6 500 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 GAS2L3Q86XJ1 694 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 MYLK4Q86YV6 388 aaPredicted RBP6.84□□□□□ -1.31
USP40-202ENST00000409945 RHPN2Q8IUC4 686 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 HACE1Q8IYU2 909 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 ATG16L2Q8NAA4 619 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 MCPH1Q8NEM0 835 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 IL17DQ8TAD2 202 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 PPP2R3CQ969Q6 453 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 C8orf49Q96NF6 230 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 GUCD1Q96NT3 240 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 STK33Q9BYT3 514 aa6.84□□□□□ -1.31
USP40-202ENST00000409945 MAGED2Q9UNF1 606 aaPredicted RBP6.84□□□□□ -1.31
USP40-202ENST00000409945 ST3GAL5Q9UNP4 418 aa6.84□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms