RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 UBXN8O00124 270 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ZSCAN9O15535 394 aaPredicted RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 HS6ST1O60243 411 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 PIM1P11309 404 aaPredicted RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ALDH4A1P30038 563 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 EHHADHQ08426 723 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 EDRF1Q3B7T1 1238 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 TMCO2Q7Z6W1 182 aaPredicted RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 LINC00523Q86TU6 105 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 MCEMP1Q8IX19 187 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 LRRC52Q8N7C0 313 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 CLIP3Q96DZ5 547 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 HERC2P3Q9BVR0 1158 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 EXOSC4Q9NPD3 245 aaKnown RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 CYLDQ9NQC7 956 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 B4GALT5O43286 388 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 MSR1P21757 451 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 RFX3P48380 749 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 CORO7P57737 925 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ANTXR2P58335 489 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 PPIDQ08752 370 aaKnown RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 INTS6LQ5JSJ4 861 aaKnown RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 HDAC7Q8WUI4 952 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 AGPAT1Q99943 283 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 GPR174Q9BXC1 333 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 PRKD2Q9BZL6 878 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 KRT84Q9NSB2 600 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 MRPL42Q9Y6G3 142 aaKnown RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 SLC35G4P0C7Q5 338 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ALAS2P22557 587 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 LSP1P33241 339 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 MMRN1Q13201 1228 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ATP1A4Q13733 1029 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 BOLA3Q53S33 107 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 NAPEPLDQ6IQ20 393 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 SERINC5Q86VE9 423 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ATCAYQ86WG3 371 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 FAM98AQ8NCA5 519 aaKnown RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 C1orf131Q8NDD1 294 aaKnown RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 EME1Q96AY2 570 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 PLD4Q96BZ4 506 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ZBTB45Q96K62 511 aaPredicted RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 TPSD1Q9BZJ3 242 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 FANCLQ9NW38 375 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 FBXL12Q9NXK8 326 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 MYADML2A6NDP7 307 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 IQCJ-SCHIP1C9J366 451 aaPredicted RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 KCNN4O15554 427 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 TNFRSF21O75509 655 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 GJA1P17302 382 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 LGALS3BPQ08380 585 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 IRGCQ6NXR0 463 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 Q8N9G6 341 aaPredicted RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 C19orf18Q8NEA5 215 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 TSPAN17Q96FV3 270 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 OTUB1Q96FW1 271 aaPredicted RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 MNTQ99583 582 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 WDR6Q9NNW5 1121 aaKnown RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ARHGEF38Q9NXL2 777 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 KLQ9UEF7 1012 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ATPIF1Q9UII2 106 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 ADAM30Q9UKF2 790 aa7.41□□□□□ -1.22
SCN9A-202ENST00000409435 AAR2Q9Y312 384 aaKnown RBP7.41□□□□□ -1.22
SCN9A-202ENST00000409435 B4DGG1 531 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 POLBP06746 335 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 CTSAP10619 480 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 IDSP22304 550 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 GTF2E2P29084 291 aaKnown RBP7.4□□□□□ -1.22
SCN9A-202ENST00000409435 GGCXP38435 758 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 SEC23AQ15436 765 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 ARMC4Q5T2S8 1044 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 ANKRD54Q6NXT1 300 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 USP53Q70EK8 1073 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 RFT1Q96AA3 541 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 HEMGNQ9BXL5 484 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 TRIM9Q9C026 710 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 EIF4ENIF1Q9NRA8 985 aaKnown RBP7.4□□□□□ -1.22
SCN9A-202ENST00000409435 ZKSCAN7Q9P0L1 754 aaPredicted RBP7.4□□□□□ -1.22
SCN9A-202ENST00000409435 GMIPQ9P107 970 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 COLEC10Q9Y6Z7 277 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 PHRF1Q9P1Y6 1649 aaKnown RBP7.4□□□□□ -1.22
SCN9A-202ENST00000409435 C4AP0C0L4 1744 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 CCDC189A1A4V9 331 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 SHISA7A6NL88 538 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 COPEO14579 308 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 CDH3P22223 829 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 PTGS2P35354 604 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 DEFB103AP81534 67 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 DSG1Q02413 1049 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 MLF2Q15773 248 aaPredicted RBP7.4□□□□□ -1.22
SCN9A-202ENST00000409435 OXR1Q8N573 874 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 CEP76Q8TAP6 659 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 TM6SF2Q9BZW4 377 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 IARS2Q9NSE4 1012 aaKnown RBP7.4□□□□□ -1.22
SCN9A-202ENST00000409435 CD274Q9NZQ7 290 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 TMEM63CQ9P1W3 806 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 URADA6NGE7 173 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 SAC3D1A6NKF1 404 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 ISM1B1AKI9 464 aa7.4□□□□□ -1.22
SCN9A-202ENST00000409435 SUPT3HB4E1H0 165 aa7.4□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 46.4 ms