RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 MFSD7Q6UXD7 560 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 C15orf52Q6ZUT6 534 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 BBS12Q6ZW61 710 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 NECAB2Q7Z6G3 386 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF467Q7Z7K2 595 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 HIPK1Q86Z02 1210 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 EMC1Q8N766 993 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ITCHQ96J02 903 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 BBS4Q96RK4 519 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF607Q96SK3 696 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 CCDC3Q9BQI4 270 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 PDCD10Q9BUL8 212 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SEZ6LQ9BYH1 1024 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 MRPL39Q9NYK5 338 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 VPS28Q9UK41 221 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SSR3Q9UNL2 185 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 XYLBO75191 536 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 C6orf222P0C671 652 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ZCCHC18P0CG32 403 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 UGT1A5P35504 534 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 UGT2B15P54855 530 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 FUT11Q495W5 492 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 CTXN3Q4LDR2 81 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 STXBP5Q5T5C0 1151 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ARMC12Q5T9G4 340 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 THOC7Q6I9Y2 204 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SNX32Q86XE0 403 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SOCS4Q8WXH5 440 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 NMD3Q96D46 503 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ZBTB10Q96DT7 871 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 CRELD1Q96HD1 420 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 CBWD1Q9BRT8 395 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 PXMP2Q9NR77 195 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 VPS4AQ9UN37 437 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 PLA2G4CQ9UP65 541 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 MYO3AQ8NEV4 1616 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 DCDC2CA8MYV0 355 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 TULP3O75386 442 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SEC22BO75396 215 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 MTA2O94776 668 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 BAIAP3O94812 1187 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 PECAM1P16284 738 aaPredicted RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF12P17014 697 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ADRA1DP25100 572 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 LRPAP1P30533 357 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 TKTL1P51854 596 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 TRIM25Q14258 630 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SMTNL2Q2TAL5 461 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 BRMS1LQ5PSV4 323 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 PACS1Q6VY07 963 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SYT12Q8IV01 421 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 UTP15Q8TED0 518 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SLC35C1Q96A29 364 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 REXO4Q9GZR2 422 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 SEMA4AQ9H3S1 761 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 CATSPERZQ9NTU4 200 aa6.18□□□□□ -1.42
SCN1A-203ENST00000409050 DMGDHQ9UI17 866 aaKnown RBP6.18□□□□□ -1.42
SCN1A-203ENST00000409050 ADAMTS13Q76LX8 1427 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CYP3A7-CYP3A51PA0A087WV96 503 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TPST1O60507 370 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 OR6A2O95222 327 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 LCA5LO95447 670 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SEC24AO95486 1093 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CYP3A7P24462 503 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 RPL21P46778 160 aaKnown RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ZNF143P52747 638 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 AP1S2P56377 157 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 BACE1P56817 501 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 VBP1P61758 197 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SMCO1Q147U7 214 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 NR1D2Q14995 579 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TYSND1Q2T9J0 566 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 VPS26BQ4G0F5 336 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 NEPROQ6NW34 567 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ALLCQ8N6M5 410 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 FIG4Q92562 907 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 WNT8BQ93098 351 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CDRT15Q96T59 188 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 C2orf49Q9BVC5 232 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 YIPF2Q9BWQ6 316 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 FHDC1Q9C0D6 1143 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 C6orf62Q9GZU0 229 aaPredicted RBP6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CPVLQ9H3G5 476 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PSMD13Q9UNM6 376 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 NCKAP1Q9Y2A7 1128 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TECPR2O15040 1411 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 C1orf167Q5SNV9 1468 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SLC12A8A0AV02 714 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 COX4I1P13073 169 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ASMTP46597 345 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 ERVK-9P63128 1117 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 LIPMQ5VYY2 423 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 TSHZ1Q6ZSZ6 1077 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CLYBLQ8N0X4 340 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 CNTD1Q8N815 330 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 B3GALNT2Q8NCR0 500 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 FAR1Q8WVX9 515 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PPP1R14AQ96A00 147 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 SGF29Q96ES7 293 aa6.17□□□□□ -1.42
SCN1A-203ENST00000409050 PPP1R36Q96LQ0 422 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms