RNA–Protein interactions for RNA: ENST00000404484.8

TPM1-208, Transcript of tropomyosin 1, humanhuman

TSL 1 (best) BASIC

Gene TPM1, Length 1,568 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-208ENST00000404484 E2F8A0AVK6 867 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 H3BQF6 201 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 AP3B1O00203 1094 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 LEFTY2O00292 366 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 DCXO43602 365 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 SPAG6O75602 509 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 AP2A1O95782 977 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 RHOCP08134 193 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 NFKB1P19838 968 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 GBP2P32456 591 aaPredicted RBP21.4■■□□□ 1.02
TPM1-208ENST00000404484 CD68P34810 354 aaPredicted RBP21.4■■□□□ 1.02
TPM1-208ENST00000404484 KRT71Q3SY84 523 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 STXBP5Q5T5C0 1151 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 GET4Q7L5D6 327 aaPredicted RBP21.4■■□□□ 1.02
TPM1-208ENST00000404484 PDCD7Q8N8D1 485 aaKnown RBP21.4■■□□□ 1.02
TPM1-208ENST00000404484 OR2W6PQ8NHA6 318 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 ITFG1Q8TB96 612 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 TCEAL4Q96EI5 215 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 RBM22Q9NW64 420 aaKnown RBP eCLIP21.4■■□□□ 1.02
TPM1-208ENST00000404484 TBC1D30Q9Y2I9 924 aa21.4■■□□□ 1.02
TPM1-208ENST00000404484 MYO18AQ92614 2054 aaKnown RBP21.39■■□□□ 1.02
TPM1-208ENST00000404484 DENND4AQ7Z401 1863 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 TRDMT1O14717 391 aaKnown RBP21.39■■□□□ 1.01
TPM1-208ENST00000404484 CACNG3O60359 315 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 TSPAN3O60637 253 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 MOSPD3O75425 235 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 ANXA9O76027 345 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 SUN1O94901 812 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 MAGEA3P43357 314 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 ZXDBP98169 803 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 STAT4Q14765 748 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 MSS51Q4VC12 460 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 PRSS36Q5K4E3 855 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 SYCP2LQ5T4T6 812 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 MARC1Q5VT66 337 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 LRRC8BQ6P9F7 803 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 CAND1Q86VP6 1230 aaKnown RBP21.39■■□□□ 1.01
TPM1-208ENST00000404484 PALM2Q8IXS6 379 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 USP33Q8TEY7 942 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 ARHGEF2Q92974 986 aaKnown RBP21.39■■□□□ 1.01
TPM1-208ENST00000404484 TMA16Q96EY4 203 aaKnown RBP21.39■■□□□ 1.01
TPM1-208ENST00000404484 FCRL5Q96RD9 977 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 LRRC40Q9H9A6 602 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 GLOD4Q9HC38 313 aa21.39■■□□□ 1.01
TPM1-208ENST00000404484 HELZP42694 1942 aaKnown RBP21.38■■□□□ 1.01
TPM1-208ENST00000404484 GFRA2O00451 464 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 PRAMEF11O60813 436 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 ASGR2P07307 311 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 ALADP13716 330 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 TNK2Q07912 1038 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 FASTKD3Q14CZ7 662 aaKnown RBP21.38■■□□□ 1.01
TPM1-208ENST00000404484 SLC5A9Q2M3M2 681 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 MPP7Q5T2T1 576 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 TMCO4Q5TGY1 634 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 ANKMY2Q8IV38 441 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 CCDC117Q8IWD4 279 aaPredicted RBP21.38■■□□□ 1.01
TPM1-208ENST00000404484 KLHDC8BQ8IXV7 354 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 BBS5Q8N3I7 341 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 CNTD1Q8N815 330 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 FBXO36Q8NEA4 188 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 SH3RF2Q8TEC5 729 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 VPS37BQ9H9H4 285 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 PPCSQ9HAB8 311 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 TMBIM4Q9HC24 238 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 DYNC1LI1Q9Y6G9 523 aaKnown RBP21.38■■□□□ 1.01
TPM1-208ENST00000404484 TEX264Q9Y6I9 313 aa21.38■■□□□ 1.01
TPM1-208ENST00000404484 TBL1XO60907 577 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 RNF40O75150 1001 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 CPP00450 1065 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 SHBGP04278 402 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 LAMP2P13473 410 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 GEMP55040 296 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 MPPE1Q53F39 396 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 IL31Q6EBC2 164 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 ZNF534Q76KX8 674 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 LINC00523Q86TU6 105 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 TEX26Q8N6G2 289 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 LRRC4CQ9HCJ2 640 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 EPS15L1Q9UBC2 864 aa21.37■■□□□ 1.01
TPM1-208ENST00000404484 MRPS23Q9Y3D9 190 aaKnown RBP21.37■■□□□ 1.01
TPM1-208ENST00000404484 CHD5Q8TDI0 1954 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 HMGB1P1B2RPK0 211 aaPredicted RBP21.36■■□□□ 1.01
TPM1-208ENST00000404484 F5H423 210 aaPredicted RBP21.36■■□□□ 1.01
TPM1-208ENST00000404484 J3KR12 359 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 TCEA3O75764 348 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 LUC7L3O95232 432 aaKnown RBP21.36■■□□□ 1.01
TPM1-208ENST00000404484 PEX11BO96011 259 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 GSTA2P09210 222 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 TCF3P15923 654 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 ACVRL1P37023 503 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 ELK3P41970 407 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 MMP13P45452 471 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 SGSHP51688 502 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 OXCT1P55809 520 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 FAM182AQ5T1J6 154 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 KCTD11Q693B1 232 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 NAPEPLDQ6IQ20 393 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 BBS7Q8IWZ6 715 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 FGF13Q92913 245 aa21.36■■□□□ 1.01
TPM1-208ENST00000404484 STMN4Q9H169 189 aaPredicted RBP21.36■■□□□ 1.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms