RNA–Protein interactions for RNA: ENST00000401473.7

HMGA1-204, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,887 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-204ENST00000401473 CXorf51AA0A1B0GTR3 108 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 KCNK1O00180 336 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 RPS9P46781 194 aaKnown RBP16.24■□□□□ 0.19
HMGA1-204ENST00000401473 MTAPQ13126 283 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 LONRF2Q1L5Z9 754 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 ACCSLQ4AC99 568 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 FNDC3BQ53EP0 1204 aaKnown RBP16.24■□□□□ 0.19
HMGA1-204ENST00000401473 INO80DQ53TQ3 878 aaPredicted RBP16.24■□□□□ 0.19
HMGA1-204ENST00000401473 SERPINA13PQ6UXR4 307 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 TMEM92Q6UXU6 159 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 BZW1Q7L1Q6 419 aaKnown RBP16.24■□□□□ 0.19
HMGA1-204ENST00000401473 KDM1BQ8NB78 822 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 TSEN2Q8NCE0 465 aaKnown RBP16.24■□□□□ 0.19
HMGA1-204ENST00000401473 ACTRT1Q8TDG2 376 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 C1orf54Q8WWF1 131 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 LRFN3Q9BTN0 628 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 CHRDQ9H2X0 955 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 SP110Q9HB58 689 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 CD248Q9HCU0 757 aa16.24■□□□□ 0.19
HMGA1-204ENST00000401473 A0A1W2PQF6 199 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 ZSCAN5CA6NGD5 496 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-204ENST00000401473 CHURC1-FNTBB4DL54 471 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 MATN3O15232 486 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 AVPR2P30518 371 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 ST8SIA6P61647 398 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 AP1B1Q10567 949 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 KIAA1211LQ6NV74 962 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 GABRG3Q99928 467 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 UBA2Q9UBT2 640 aaPredicted RBP16.23■□□□□ 0.19
HMGA1-204ENST00000401473 DNPEPQ9ULA0 475 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 CACNA1HO95180 2353 aa16.23■□□□□ 0.19
HMGA1-204ENST00000401473 NPC1O15118 1278 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 MUSKO15146 869 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 TMCC1O94876 653 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 EPHX1P07099 455 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 RBP3P10745 1247 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 NNMTP40261 264 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 NRLP54845 237 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 EIF3EP60228 445 aaKnown RBP16.22■□□□□ 0.19
HMGA1-204ENST00000401473 XRCC4Q13426 336 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 PRKD1Q15139 912 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-204ENST00000401473 HNRNPA1L2Q32P51 320 aaKnown RBP16.22■□□□□ 0.19
HMGA1-204ENST00000401473 Q6ZVU0 165 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 CCDC13Q8IYE1 715 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 TTC13Q8NBP0 860 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 CCDC26Q8TAB7 109 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 SLC35B2Q8TB61 432 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 TFB1MQ8WVM0 346 aaKnown RBP16.22■□□□□ 0.19
HMGA1-204ENST00000401473 MAML1Q92585 1016 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 VOPP1Q96AW1 172 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 CAPZA3Q96KX2 299 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 AP1M1Q9BXS5 423 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 TNKS2Q9H2K2 1166 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 MMP17Q9ULZ9 603 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 PDE2AO00408 941 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-204ENST00000401473 PPP1R12AO14974 1030 aaPredicted RBP16.22■□□□□ 0.19
HMGA1-204ENST00000401473 CCNB1P14635 433 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 COL9A1P20849 921 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 RBL1P28749 1068 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 ZNF33AQ06730 810 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 ZBTB17Q13105 803 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 HNRNPDQ14103 355 aaKnown RBP16.22■□□□□ 0.19
HMGA1-204ENST00000401473 LBRQ14739 615 aaKnown RBP16.22■□□□□ 0.19
HMGA1-204ENST00000401473 C9orf64Q5T6V5 341 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 PGBD5Q8N414 524 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 TEX26Q8N6G2 289 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 PRELID2Q8N945 189 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 OR2A12Q8NGT7 310 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 ZNF592Q92610 1267 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 FATE1Q969F0 183 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 CEP41Q9BYV8 373 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 TM6SF2Q9BZW4 377 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 USP29Q9HBJ7 922 aa16.22■□□□□ 0.19
HMGA1-204ENST00000401473 H7C0C1 242 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 GJB3O75712 270 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 RGRP47804 291 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 ATP5OP48047 213 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 CLCN6P51797 869 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 GEMIN4P57678 1058 aaKnown RBP16.21■□□□□ 0.19
HMGA1-204ENST00000401473 CRY1Q16526 586 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 KCTD19Q17RG1 926 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-204ENST00000401473 SLC45A4Q5BKX6 768 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 MARC1Q5VT66 337 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 TIGD7Q6NT04 549 aaPredicted RBP16.21■□□□□ 0.19
HMGA1-204ENST00000401473 SYT13Q7L8C5 426 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 CNTD1Q8N815 330 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 ISG20Q96AZ6 181 aaKnown RBP16.21■□□□□ 0.19
HMGA1-204ENST00000401473 ZNF599Q96NL3 588 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 BRD8Q9H0E9 1235 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 PRSS16Q9NQE7 514 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 GON4LQ3T8J9 2241 aa16.21■□□□□ 0.19
HMGA1-204ENST00000401473 TTC24A2A3L6 582 aaPredicted RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 ESPNB1AK53 854 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 RNF103O00237 685 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 PGRMC1O00264 195 aaKnown RBP16.2■□□□□ 0.18
HMGA1-204ENST00000401473 LIASO43766 372 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 BNIP3LO60238 219 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 SIN3BO75182 1162 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 JCHAINP01591 159 aa16.2■□□□□ 0.18
HMGA1-204ENST00000401473 HOXB2P14652 356 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms