RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 CRYBG2Q8N1P7 616 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 TSPAN18Q96SJ8 248 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 MPP6Q9NZW5 540 aa18.81■□□□□ 0.6
USP48-204ENST00000400301 IGKV6-21A0A0C4DH24 114 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 RGSL1A5PLK6 1076 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 RPL9P32969 192 aaKnown RBP18.8■□□□□ 0.6
USP48-204ENST00000400301 CD86P42081 329 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 PPM1FP49593 454 aaPredicted RBP18.8■□□□□ 0.6
USP48-204ENST00000400301 MAXP61244 160 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 TMED1Q13445 227 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 WLSQ5T9L3 541 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 DHDDSQ86SQ9 333 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 PCED1BQ96HM7 432 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 RBBP8Q99708 897 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 RIC8BQ9NVN3 520 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 ATP5F1P24539 256 aaPredicted RBP18.8■□□□□ 0.6
USP48-204ENST00000400301 MPSTP25325 297 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 LIMK2P53671 638 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 OXCT1P55809 520 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 RAB6CQ53S08 254 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 ZSCAN18Q8TBC5 510 aaPredicted RBP18.8■□□□□ 0.6
USP48-204ENST00000400301 DENND1AQ8TEH3 1009 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 CYGBQ8WWM9 190 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 RAB6CQ9H0N0 254 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 COPS7BQ9H9Q2 264 aaPredicted RBP18.8■□□□□ 0.6
USP48-204ENST00000400301 SYTL2Q9HCH5 934 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 UTP6Q9NYH9 597 aaKnown RBP18.8■□□□□ 0.6
USP48-204ENST00000400301 FAM8A1Q9UBU6 413 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 WARS2Q9UGM6 360 aaKnown RBP18.8■□□□□ 0.6
USP48-204ENST00000400301 ENDOD1O94919 500 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 YWHAQP27348 245 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 DAOAP59103 153 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 ACSBG2Q5FVE4 666 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 TMEM63BQ5T3F8 832 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 SDHAF4Q5VUM1 108 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 FSTL4Q6MZW2 842 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 ISLR2Q6UXK2 745 aa18.8■□□□□ 0.6
USP48-204ENST00000400301 E7ESA3 106 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 MRASO14807 208 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 PEX11AO75192 247 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 VPS26AO75436 327 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 RECQLP46063 649 aaPredicted RBP18.79■□□□□ 0.6
USP48-204ENST00000400301 SOCS4Q8WXH5 440 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 PCDHB7Q9Y5E2 793 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 LTBP3Q9NS15 1303 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 MSI1O43347 362 aaKnown RBP18.79■□□□□ 0.6
USP48-204ENST00000400301 MAGEC1O60732 1142 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 HSPA1AP0DMV8 641 aaKnown RBP18.79■□□□□ 0.6
USP48-204ENST00000400301 HSPA1BP0DMV9 641 aaKnown RBP18.79■□□□□ 0.6
USP48-204ENST00000400301 CLCNKBP51801 687 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 KLF10Q13118 480 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 FUT11Q495W5 492 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 FAM171A1Q5VUB5 890 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 PIWIL4Q7Z3Z4 852 aaKnown RBP18.79■□□□□ 0.6
USP48-204ENST00000400301 SPATA22Q8NHS9 363 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 AGAP2Q99490 1192 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 ALG9Q9H6U8 611 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 USP29Q9HBJ7 922 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 GLOD4Q9HC38 313 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 TLR8Q9NR97 1041 aaKnown RBP18.79■□□□□ 0.6
USP48-204ENST00000400301 TMPRSS4Q9NRS4 437 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 ZNF358Q9NW07 568 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 PKP3Q9Y446 797 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 A0A087X1B8 175 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 PAGE1O75459 146 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 HNRNPLP14866 589 aaKnown RBP eCLIP18.79■□□□□ 0.68e-8■■■■■ 29.5
USP48-204ENST00000400301 PSMC3P17980 439 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 DLG2Q15700 870 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 CYP2R1Q6VVX0 501 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 EFL1Q7Z2Z2 1120 aaKnown RBP18.79■□□□□ 0.6
USP48-204ENST00000400301 RCN3Q96D15 328 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 VRTNQ9H8Y1 702 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 CACNG4Q9UBN1 327 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 LNPEPQ9UIQ6 1025 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 VPS9D1Q9Y2B5 631 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 GIT1Q9Y2X7 761 aa18.79■□□□□ 0.6
USP48-204ENST00000400301 FAM159BA6NKW6 160 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 DNAJC6O75061 913 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 CRTAMO95727 393 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 CLPTM1O96005 669 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 WNT3AP56704 352 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 PLIN5Q00G26 463 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 MOGSQ13724 837 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 GRM3Q14832 879 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 PPP1R15BQ5SWA1 713 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 DCLRE1AQ6PJP8 1040 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 DQX1Q8TE96 717 aaKnown RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 SIGLEC10Q96LC7 697 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 APOL5Q9BWW9 433 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 GBA3Q9H227 469 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 PTPRHQ9HD43 1115 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 MID1IP1Q9NPA3 183 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 NKX1-2Q9UD57 310 aaPredicted RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 NIPSNAP3AQ9UFN0 247 aaPredicted RBP18.78■□□□□ 0.6
USP48-204ENST00000400301 PRKAG3Q9UGI9 489 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 APPL1Q9UKG1 709 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 CROTQ9UKG9 612 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 NHSQ6T4R5 1651 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 PIK3R1P27986 724 aa18.78■□□□□ 0.6
USP48-204ENST00000400301 PHEXP78562 749 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms