RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 SYDE1Q6ZW31 735 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-202ENST00000394943 C11orf74Q86VG3 221 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 CCDC13Q8IYE1 715 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 OR2A12Q8NGT7 310 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 OR2T3Q8NH03 318 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 IMP4Q96G21 291 aaKnown RBP7.15□□□□□ -1.27
LIMA1-202ENST00000394943 SGSM3Q96HU1 749 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 NECAB3Q96P71 396 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-202ENST00000394943 FCRL5Q96RD9 977 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 MCCC1Q96RQ3 725 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-202ENST00000394943 L2HGDHQ9H9P8 463 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 PRSS16Q9NQE7 514 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 FEZ2Q9UHY8 353 aaPredicted RBP7.15□□□□□ -1.27
LIMA1-202ENST00000394943 RIMKLBQ9ULI2 386 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 WASF2Q9Y6W5 498 aa7.15□□□□□ -1.27
LIMA1-202ENST00000394943 LOC285095A0A1B0GVY8 99 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 SPINT1O43278 529 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 SPOPO43791 374 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 PECAM1P16284 738 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 POLR2EP19388 210 aaKnown RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 PRKCHP24723 683 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 ACVRL1P37023 503 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 IL12RB1P42701 662 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 SOX9P48436 509 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 AP1S1P61966 158 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 SKOR1P84550 965 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 IHHQ14623 411 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 EGFLAMQ63HQ2 1017 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 SFTPA1Q8IWL2 248 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 SIX5Q8N196 739 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 UCMAQ8WVF2 138 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 ZNF830Q96NB3 372 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 ITM2CQ9NQX7 267 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 STON1Q9Y6Q2 735 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 MYO7AQ13402 2215 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 COL6A3P12111 3177 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 MACROD2A1Z1Q3 448 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 PPP1R12AO14974 1030 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 NUDT1P36639 197 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 NOP2P46087 812 aaKnown RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 GBE1Q04446 702 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 KRT81Q14533 505 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 SMTNL2Q2TAL5 461 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 TMEM52BQ4KMG9 183 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 RETSATQ6NUM9 610 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 NEK5Q6P3R8 708 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 KDELC1Q6UW63 502 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 CIR1Q86X95 450 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 CFAP52Q8N1V2 620 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 PRELID2Q8N945 189 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 DTWD2Q8NBA8 298 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 HSPH1Q92598 858 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 RNF34Q969K3 372 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 TEKT5Q96M29 485 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 NAP1L3Q99457 506 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 NAPGQ99747 312 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 SIT1Q9Y3P8 196 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 TECTAO75443 2155 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 H0Y626 953 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 TSPAN3O60637 253 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 FTCDO95954 541 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 ADH1BP00325 375 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 COL9A1P20849 921 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 STIP1P31948 543 aaKnown RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 CD68P34810 354 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 PTGIRP43119 386 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 MAGEA3P43357 314 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 RPS14P62263 151 aaKnown RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 CDH18Q13634 790 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 FRG1Q14331 258 aaKnown RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 LBRQ14739 615 aaKnown RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 CRY1Q16526 586 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 ANO4Q32M45 955 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 ALLCQ8N6M5 410 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 CNTD1Q8N815 330 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 LENG8Q96PV6 779 aaPredicted RBP7.14□□□□□ -1.27
LIMA1-202ENST00000394943 GOLPH3Q9H4A6 298 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 STIM2Q9P246 746 aa7.14□□□□□ -1.27
LIMA1-202ENST00000394943 TOR1BO14657 336 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 MOCS2O96007 188 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 HOXC4P09017 264 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 ITGB7P26010 798 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 PTPN3P26045 913 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 CTSOP43234 321 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 ELAVL3Q14576 367 aaKnown RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 TEX44Q53QW1 395 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 CARD16Q5EG05 197 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 SCYL2Q6P3W7 929 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 TPGS1Q6ZTW0 290 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 CDKL3Q8IVW4 592 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 CARNMT1Q8N4J0 409 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 RAB7BQ96AH8 199 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 ORAI3Q9BRQ5 295 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 FAM129AQ9BZQ8 928 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 PABPC3Q9H361 631 aaKnown RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 EPHX3Q9H6B9 360 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 SLC25A13Q9UJS0 675 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 MYO10Q9HD67 2058 aa7.13□□□□□ -1.27
LIMA1-202ENST00000394943 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP7.13□□□□□ -1.27
LIMA1-202ENST00000394943 H0Y858 1186 aa7.13□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms