RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 NIPA1Q7RTP0 329 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 ARMC8Q8IUR7 673 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 DEPDC4Q8N2C3 294 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 TRPV3Q8NET8 790 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 REPS2Q8NFH8 660 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 BHLHE22Q8NFJ8 381 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF75CPQ92670 426 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 TATDN2Q93075 761 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 PHF11Q9UIL8 331 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 PCDHGC5Q9Y5F6 944 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 EPORP19235 508 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 TPP2P29144 1249 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 MAPK8P45983 427 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 SPATA20Q8TB22 786 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 POP5Q969H6 163 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 BTBD3Q9Y2F9 522 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 NFASCO94856 1347 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 LACTBL1A8MY62 500 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 RRP1BQ14684 758 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 METTL3Q86U44 580 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 SCUBE3Q8IX30 993 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 CMTM6Q9NX76 183 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 SMPD4Q9NXE4 827 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 BTBD7Q9P203 1132 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 SUCOQ9UBS9 1254 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 COG5Q9UP83 839 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 MANSC4A6NHS7 340 aaPredicted RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 CHADO15335 359 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 LTA4HP09960 611 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 MYL9P24844 172 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 CCT3P49368 545 aaKnown RBP12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 GCNT1Q02742 428 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 FAM171BQ6P995 826 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 ARHGEF19Q8IW93 802 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 AP3S1Q92572 193 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 XPNPEP3Q9NQH7 507 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 CDH9Q9ULB4 789 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 GAKO14976 1311 aa12.95□□□□□ -0.34
CCDC88C-204ENST00000389857 TPP1O14773 563 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 FTH1P02794 183 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 S100A9P06702 114 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ACAT1P24752 427 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 CYP2C18P33260 490 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 SRP54P61011 504 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 C3orf67Q6ZVT6 689 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ZCCHC9Q8N567 271 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF248Q8NDW4 579 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 FNIP1Q8TF40 1166 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 C2orf49Q9BVC5 232 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 MRPL17Q9NRX2 175 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 IQSEC2Q5JU85 1478 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 PDHXO00330 501 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 SSNA1O43805 119 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 AKR1A1P14550 325 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 OAZ1P54368 228 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 DMPKQ09013 629 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 PCID2Q5JVF3 399 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 LRRIQ1Q96JM4 1722 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 HMGCRP04035 888 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 TTKP33981 857 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 CAMK1Q14012 370 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 TTC27Q6P3X3 843 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 TSHZ1Q6ZSZ6 1077 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ZC3H7AQ8IWR0 971 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 RGL4Q8IZJ4 473 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 SLC2A14Q8TDB8 520 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 SYTL5Q8TDW5 730 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 COL26A1Q96A83 441 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 DCUN1D5Q9BTE7 237 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 IGFLR1Q9H665 355 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 DNMT3LQ9UJW3 386 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 RPL21P46778 160 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 STXBP5Q5T5C0 1151 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ESRP1Q6NXG1 681 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 AFTPHQ6ULP2 937 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ZPBP2Q6X784 338 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 TMC3Q7Z5M5 1100 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 CAMK1DQ8IU85 385 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 PSTKQ8IV42 348 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 PJA1Q8NG27 643 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ZNF304Q9HCX3 659 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 KLQ9UEF7 1012 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 GPN3Q9UHW5 284 aaPredicted RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 LOC100506127A0A0U1RQW1 187 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 GCATO75600 419 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 MYBL2P10244 700 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 NPR3P17342 541 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ATP5C1P36542 298 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 RAB2AP61019 212 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 LGALS3BPQ08380 585 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 SMIM5Q71RC9 77 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 DEFB106AQ8N104 65 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 KLHL23Q8NBE8 558 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 DGCR6LQ9BY27 220 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 ADAM28Q9UKQ2 775 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 DCXO43602 365 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 RPL4P36578 427 aaKnown RBP12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 PALB2Q86YC2 1186 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 CYP4X1Q8N118 509 aa12.94□□□□□ -0.34
CCDC88C-204ENST00000389857 CXorf40BQ96DE9 158 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 49.9 ms