RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 PHGDHO43175 533 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 IL1BP01584 269 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 ITGB3P05106 788 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 CCDC130P13994 396 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 ARF4P18085 180 aaPredicted RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 MAP4P27816 1152 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 EPHX2P34913 555 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 DPP6P42658 865 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 RELAQ04206 551 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 DGKDQ16760 1214 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 GLRA4Q5JXX5 417 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 FAM219BQ5XKK7 198 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 EGFLAMQ63HQ2 1017 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 RNF135Q8IUD6 432 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 BBS5Q8N3I7 341 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 GABPB2Q8TAK5 448 aaPredicted RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 KBTBD7Q8WVZ9 684 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 COX4I2Q96KJ9 171 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 NAA50Q9GZZ1 169 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 SOX17Q9H6I2 414 aaPredicted RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 SNX15Q9NRS6 342 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 MRPL42Q9Y6G3 142 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 MT-ND1P03886 318 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 JUNP05412 331 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 ZNF23P17027 643 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 GPD2P43304 727 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 CD97P48960 835 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 LAMC2Q13753 1193 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 FGD3Q5JSP0 725 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 TMEM53Q6P2H8 277 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 TMEM26Q6ZUK4 368 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 HERC6Q8IVU3 1022 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 CPB2Q96IY4 423 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 AGAP2Q99490 1192 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 GPATCH1Q9BRR8 931 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 POLR1BQ9H9Y6 1135 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 DNAJC28Q9NX36 388 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 MFHAS1Q9Y4C4 1052 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 DNAH12Q6ZR08 3092 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 LSM1O15116 133 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 MED7O43513 233 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 PORP16435 677 aaPredicted RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 GPD1P21695 349 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 GARSP41250 739 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 PTPN11Q06124 597 aaPredicted RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 PLCL1Q15111 1095 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 MAP1SQ66K74 1059 aaPredicted RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 ZFP1Q6P2D0 407 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 NANOGNBQ7Z5D8 188 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 C7orf31Q8N865 590 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 ISOC1Q96CN7 298 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 MCRS1Q96EZ8 462 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 TMEM176AQ96HP8 235 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 ASB7Q9H672 318 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 GMPR2Q9P2T1 348 aaKnown RBP14.07□□□□□ -0.16
SDC1-202ENST00000381150 PCDHA11Q9Y5I1 949 aa14.07□□□□□ -0.16
SDC1-202ENST00000381150 FAM159BA6NKW6 160 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 C9JVG2 144 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 AP1G1O43747 822 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 KCNH1O95259 989 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 TSHRP16473 764 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 NFKBIAP25963 317 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 HMOX2P30519 316 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 L1CAMP32004 1257 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 HSPA13P48723 471 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 NR1D2Q14995 579 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 ZNF423Q2M1K9 1284 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 SCUBE3Q8IX30 993 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 ZC3H15Q8WU90 426 aaKnown RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 EMID1Q96A84 441 aaPredicted RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 GATA5Q9BWX5 397 aaPredicted RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 CXorf21Q9HAI6 301 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 TRIP11Q15643 1979 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 PLXNB2O15031 1838 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 NRP1O14786 923 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 GSRP00390 522 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 VTNP04004 478 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 ZNF182P17025 639 aaPredicted RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 HOXD12P35452 270 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 ARL13AQ5H913 290 aaPredicted RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 MARCH8Q5T0T0 291 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 USP50Q70EL3 339 aaPredicted RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 CROCCP3Q8IVE0 287 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 SLC7A5P1Q8MH63 180 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 CMASQ8NFW8 434 aaPredicted RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 PPTC7Q8NI37 304 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 PCDH19Q8TAB3 1148 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 MTG1Q9BT17 334 aaPredicted RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 FAM96AQ9H5X1 160 aa14.06□□□□□ -0.16
SDC1-202ENST00000381150 CLK4Q9HAZ1 481 aaKnown RBP14.06□□□□□ -0.16
SDC1-202ENST00000381150 KDM1AO60341 852 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 TRIM13O60858 407 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 GPC4O75487 556 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 MICAL2O94851 1124 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 ATE1O95260 518 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 TPH1P17752 444 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 CYP3A5P20815 502 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 ATICP31939 592 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 GRIA3P42263 894 aa14.05□□□□□ -0.16
SDC1-202ENST00000381150 OXCT1P55809 520 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms