RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 TTC24A2A3L6 582 aaPredicted RBP13.6□□□□□ -0.23
CCDC3-202ENST00000378839 AURKAO14965 403 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 MTSS1O43312 755 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 ELNP15502 786 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 AOC1P19801 751 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 SAT1P21673 171 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 CCNCP24863 283 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 GRIK1P39086 918 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 CDH17Q12864 832 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 DLG1Q12959 904 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 DDR2Q16832 855 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 SLC9B1Q4ZJI4 515 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 SLC39A12Q504Y0 691 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 RALGPS1Q5JS13 557 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 CLLU1OSQ5K130 101 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 AFMIDQ63HM1 303 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 ZNF280DQ6N043 979 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 TMPRSS6Q8IU80 811 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 WDR75Q8IWA0 830 aaKnown RBP13.6□□□□□ -0.23
CCDC3-202ENST00000378839 VAT1Q99536 393 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 DCLRE1BQ9H816 532 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 SLC7A8Q9UHI5 535 aa13.6□□□□□ -0.23
CCDC3-202ENST00000378839 ZBTB14O43829 449 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 PSMG1O95456 288 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 PEX11BO96011 259 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 SLC35E2BP0CK96 405 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 NUMBP49757 651 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 PIK3R6Q5UE93 754 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 TRAF7Q6Q0C0 670 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 SLC41A1Q8IVJ1 513 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCDC3-202ENST00000378839 FAM161BQ96MY7 647 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 HAPLN3Q96S86 360 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 THTPAQ9BU02 230 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 FICDQ9BVA6 458 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 SMOC2Q9H3U7 446 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 GLOD4Q9HC38 313 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 A0A088AWK7 358 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 GRK4P32298 578 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 GLRBP48167 497 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 TUBP50607 506 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 PKN3Q6P5Z2 889 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 ULK2Q8IYT8 1036 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 CENPLQ8N0S6 344 aaPredicted RBP13.59□□□□□ -0.23
CCDC3-202ENST00000378839 GPR22Q99680 433 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 TBL1YQ9BQ87 522 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 GATA5Q9BWX5 397 aaPredicted RBP13.59□□□□□ -0.23
CCDC3-202ENST00000378839 MMADHCQ9H3L0 296 aaPredicted RBP13.59□□□□□ -0.23
CCDC3-202ENST00000378839 COG4Q9H9E3 785 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 NMRAL1Q9HBL8 299 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 SDAD1Q9NVU7 687 aaKnown RBP eCLIP13.59□□□□□ -0.23
CCDC3-202ENST00000378839 DNAJB4Q9UDY4 337 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 PCDHB12Q9Y5F1 795 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 KIF3CO14782 793 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 ZMPSTE24O75844 475 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 PAPOLAP51003 745 aaKnown RBP13.59□□□□□ -0.23
CCDC3-202ENST00000378839 TAF11Q15544 211 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 CCDC153Q494R4 210 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 ATPAF2Q8N5M1 289 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 SLC25A41Q8N5S1 370 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 MRGPRX2Q96LB1 330 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 FCRL5Q96RD9 977 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 OSBPL1AQ9BXW6 950 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 ABCC13Q9NSE7 274 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 DNAJC28Q9NX36 388 aa13.59□□□□□ -0.23
CCDC3-202ENST00000378839 MAGEB16A2A368 324 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 TMEM88BA6NKF7 163 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 E9PAM4 449 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 SPECC1L-ADORA2AF8WAN1 911 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 MATN3O15232 486 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 MAGEC1O60732 1142 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 PMPCBO75439 489 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 GJB3O75712 270 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 SOAT2O75908 522 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 VAPBO95292 243 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 GRK2P25098 689 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 MFSD14CQ5VZR4 134 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 BTBD8Q5XKL5 378 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 TRIM68Q6AZZ1 485 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 RIPOR1Q6ZS17 1223 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 SPATA2LQ8IUW3 424 aaPredicted RBP13.58□□□□□ -0.24
CCDC3-202ENST00000378839 ZNF683Q8IZ20 524 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 EFCAB3Q8N7B9 438 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 MAB21L3Q8N8X9 362 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 KCTD4Q8WVF5 259 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 NAF1Q96HR8 494 aaKnown RBP13.58□□□□□ -0.24
CCDC3-202ENST00000378839 B3GALT6Q96L58 329 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 GPR78Q96P69 363 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 OR52B2Q96RD2 323 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 ZCWPW1Q9H0M4 648 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 NMRK1Q9NWW6 199 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 ABI2Q9NYB9 513 aaPredicted RBP13.58□□□□□ -0.24
CCDC3-202ENST00000378839 TARM1B6A8C7 271 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 TM7SF2O76062 418 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 TBX18O95935 607 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 MPOP05164 745 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 MPSTP25325 297 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 RAB27AP51159 221 aa13.58□□□□□ -0.24
CCDC3-202ENST00000378839 YWHAHQ04917 246 aaPredicted RBP13.58□□□□□ -0.24
CCDC3-202ENST00000378839 ZNF789Q5FWF6 425 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms