RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 RWDD4Q6NW29 188 aaKnown RBP22.17■■□□□ 1.14
CCDC28B-201ENST00000373602 UNQ6494/PRO21346Q6UXR6 183 aa22.17■■□□□ 1.14
CCDC28B-201ENST00000373602 RAB44Q7Z6P3 723 aaPredicted RBP22.17■■□□□ 1.14
CCDC28B-201ENST00000373602 CHST14Q8NCH0 376 aa22.17■■□□□ 1.14
CCDC28B-201ENST00000373602 TNKS2Q9H2K2 1166 aa22.17■■□□□ 1.14
CCDC28B-201ENST00000373602 NDFIP2Q9NV92 336 aa22.17■■□□□ 1.14
CCDC28B-201ENST00000373602 TMEM248Q9NWD8 314 aa22.17■■□□□ 1.14
CCDC28B-201ENST00000373602 A0A1B0GTQ1 180 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 C1QTNF9BB2RNN3 333 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 KPNA3O00505 521 aaPredicted RBP22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 C1QTNF9P0C862 333 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 ETFBP38117 255 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 RECQLP46063 649 aaPredicted RBP22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 ZNF165P49910 485 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 ZNF143P52747 638 aaPredicted RBP22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 CCDC15Q0P6D6 951 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 FILIP1LQ4L180 1135 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 SLC45A4Q5BKX6 768 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 PPP1R15BQ5SWA1 713 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 DPY19L3Q6ZPD9 716 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 MCOLN2Q8IZK6 566 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 CHCHD4Q8N4Q1 142 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 PCDH20Q8N6Y1 951 aaKnown RBP22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 ADAMTS14Q8WXS8 1223 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 GATA6Q92908 595 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 ARRDC3Q96B67 414 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 TBC1D31Q96DN5 1066 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 CDC6Q99741 560 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 PREBQ9HCU5 417 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 IL36AQ9UHA7 158 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 KLK13Q9UKR3 277 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 DMTF1Q9Y222 760 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 BTBD3Q9Y2F9 522 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 MSRB2Q9Y3D2 182 aa22.16■■□□□ 1.14
CCDC28B-201ENST00000373602 FAM221BA6H8Z2 402 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 ANKRD62A6NC57 917 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 RNF103O00237 685 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 CCP110O43303 1012 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 CD160O95971 181 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 TNFAIP3P21580 790 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 MAT2AP31153 395 aaKnown RBP22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 ACVRL1P37023 503 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 RPL7AP62424 266 aaKnown RBP22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 ARSIQ5FYB1 569 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 SLFN11Q7Z7L1 901 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 SLCO6A1Q86UG4 719 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 MCEEQ96PE7 176 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 ELF4Q99607 663 aaPredicted RBP22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 FUCA2Q9BTY2 467 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 MAGEH1Q9H213 219 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 DNAI1Q9UI46 699 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 APOBEC2Q9Y235 224 aaKnown RBP22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 WASF2Q9Y6W5 498 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 CACNA1BQ00975 2339 aa22.15■■□□□ 1.14
CCDC28B-201ENST00000373602 CHD5Q8TDI0 1954 aa22.14■■□□□ 1.14
CCDC28B-201ENST00000373602 A0A1W2PQC6 194 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 TLR4O00206 839 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 L1CAMP32004 1257 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 GRK6P43250 576 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 SETMARQ53H47 684 aaPredicted RBP22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 CARD16Q5EG05 197 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 PRAMEF14Q5SWL7 426 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 PPP1R2P3Q6NXS1 205 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 NEK5Q6P3R8 708 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 MFSD2AQ8NA29 543 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 GRIN3AQ8TCU5 1115 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 ARHGEF2Q92974 986 aaKnown RBP22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 VCPIP1Q96JH7 1222 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 CNPY3Q9BT09 278 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 HDAC8Q9BY41 377 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 DYRK4Q9NR20 520 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 GDF3Q9NR23 364 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 TAS2R14Q9NYV8 317 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 FCF1Q9Y324 198 aaKnown RBP22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 ACTL7AQ9Y615 435 aa22.14■■□□□ 1.13
CCDC28B-201ENST00000373602 CEP295Q9C0D2 2601 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 TP53BP1Q12888 1972 aaPredicted RBP22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 A0A1B0GTH6 734 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 LRRC53A6NM62 1247 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 LEFTY1O75610 366 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 NXPH1P58417 271 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 IL9RQ01113 521 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 IQCB1Q15051 598 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 SHBQ15464 509 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 EFHC2Q5JST6 749 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 ERN2Q76MJ5 926 aaKnown RBP22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 PYROXD2Q8N2H3 581 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 PNPLA1Q8N8W4 532 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 ISG20Q96AZ6 181 aaKnown RBP22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 NAP1L5Q96NT1 182 aaPredicted RBP22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 HEPHQ9BQS7 1158 aa22.13■■□□□ 1.13
CCDC28B-201ENST00000373602 RAMP2O60895 175 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 RNGTTO60942 597 aaKnown RBP22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 AIF1P55008 147 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 GEMIN4P57678 1058 aaKnown RBP22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 OVGP1Q12889 678 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 ASIC2Q16515 512 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 SCYL2Q6P3W7 929 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 DCUN1D2Q6PH85 259 aa22.12■■□□□ 1.13
CCDC28B-201ENST00000373602 IQCHQ86VS3 1027 aa22.12■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms