RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 CYP11B2P19099 503 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 NTSR1P30989 418 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 HSD17B2P37059 387 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 GDI2P50395 445 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 ARSFP54793 590 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 TBL3Q12788 808 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 TRIM32Q13049 653 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PDE1CQ14123 709 aaPredicted RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 MARC1Q5VT66 337 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 GDPD4Q6W3E5 623 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 RBM43Q6ZSC3 357 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 TMTC3Q6ZXV5 915 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 ZDHHC17Q8IUH5 632 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 SLC5A8Q8N695 610 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 DTX3LQ8TDB6 740 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 HASPINQ8TF76 798 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 BTBD9Q96Q07 612 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 FERD3LQ96RJ6 166 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 CBWD1Q9BRT8 395 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 EIF2AQ9BY44 585 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 DEFB126Q9BYW3 111 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 UPF3AQ9H1J1 476 aaKnown RBP4.16□□□□□ -1.74
USH2A-202ENST00000366942 SMURF2Q9HAU4 748 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 FBXL12Q9NXK8 326 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 PISDQ9UG56 409 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 MAN2B2Q9Y2E5 1009 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 C10orf71Q711Q0 1435 aa4.16□□□□□ -1.74
USH2A-202ENST00000366942 MCIDASD6RGH6 385 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 FFAR2O15552 330 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 CLDN11O75508 207 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 PGLSO95336 258 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 AHSGP02765 367 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 VTNP04004 478 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 TYMPP19971 482 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 PRIM2P49643 509 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SUOXP51687 545 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SLC7A5Q01650 507 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 LRRC63Q05C16 580 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 KCNMA1Q12791 1236 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 MLC1Q15049 377 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 FLYWCH1Q4VC44 716 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SPDYAQ5MJ70 313 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 KIAA0930Q6ICG6 404 aaPredicted RBP4.15□□□□□ -1.74
USH2A-202ENST00000366942 USP17L6PQ6QN14 398 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 LONP2Q86WA8 852 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 PASD1Q8IV76 773 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 MRPL41Q8IXM3 137 aaKnown RBP4.15□□□□□ -1.74
USH2A-202ENST00000366942 IGSF22Q8N9C0 903 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 PLA2G15Q8NCC3 412 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 ASB5Q8WWX0 329 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 P2RX5Q93086 422 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 RAB7BQ96AH8 199 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SERPINB12Q96P63 405 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 PLEKHG4BQ96PX9 1271 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 FAM111AQ96PZ2 611 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SLC2A13Q96QE2 648 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 HEPHQ9BQS7 1158 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 NPLQ9BXD5 320 aaPredicted RBP4.15□□□□□ -1.74
USH2A-202ENST00000366942 HDHD5Q9BXW7 423 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 BCL2L14Q9BZR8 327 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 DPY30Q9C005 99 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SLC6A16Q9GZN6 736 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SP140LQ9H930 580 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 NECTIN3Q9NQS3 549 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 TBC1D13Q9NVG8 400 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 TAS2R14Q9NYV8 317 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 CD274Q9NZQ7 290 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 TMEM9Q9P0T7 183 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SRPK3Q9UPE1 567 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 HS3ST4Q9Y661 456 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 ZNF609O15014 1411 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 KLHL33A6NCF5 533 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 H7C0S8 307 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 ACKR2O00590 384 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SGTAO43765 313 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 EXTL3O43909 919 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SCN2BO60939 215 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 ADAMTS4O75173 837 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 PPP1R37O75864 691 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 SRP72O76094 671 aaKnown RBP4.15□□□□□ -1.74
USH2A-202ENST00000366942 RETP07949 1114 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 RHOP08100 348 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 TRIM27P14373 513 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 RPS6KB1P23443 525 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 ITGB8P26012 769 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 ZNF132P52740 706 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 GALK2Q01415 458 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 DDR1Q08345 913 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 ZPBP2Q6X784 338 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 ESX1Q8N693 406 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 CPEB3Q8NE35 698 aaKnown RBP4.15□□□□□ -1.74
USH2A-202ENST00000366942 NAF1Q96HR8 494 aaKnown RBP4.15□□□□□ -1.74
USH2A-202ENST00000366942 POLR3CQ9BUI4 534 aaPredicted RBP4.15□□□□□ -1.74
USH2A-202ENST00000366942 XAB2Q9HCS7 855 aaKnown RBP4.15□□□□□ -1.74
USH2A-202ENST00000366942 VPS18Q9P253 973 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 GPR34Q9UPC5 381 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 IFT52Q9Y366 437 aa4.15□□□□□ -1.74
USH2A-202ENST00000366942 A8MUI8 341 aa4.15□□□□□ -1.75
USH2A-202ENST00000366942 B4DGG1 531 aa4.15□□□□□ -1.75
USH2A-202ENST00000366942 MGRN1O60291 552 aa4.15□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms