RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 DUSP16Q9BY84 665 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 WDCPQ9H6R7 721 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 OXSMQ9NWU1 459 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 CCDC167Q9P0B6 97 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 OR12D3Q9UGF7 316 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 SLC2A6Q9UGQ3 507 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 PSMD13Q9UNM6 376 aa12.33□□□□□ -0.44
CLIP3-201ENST00000360535 A0A1B0GTW7 788 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 KCNU1A8MYU2 1149 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 XPO1O14980 1071 aaKnown RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CRTAMO95727 393 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 AHSGP02765 367 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 MPOP05164 745 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 MYL4P12829 197 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 DPP6P42658 865 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 LILRA4P59901 499 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CSHL1Q14406 222 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 ESRP1Q6NXG1 681 aaKnown RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 C16orf89Q6UX73 402 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CLEC20AQ6ZU45 233 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 PDZD4Q76G19 769 aaPredicted RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 ARHGAP18Q8N392 663 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 LRRC52Q8N7C0 313 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 NPY6RQ99463 290 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 IL1RL2Q9HB29 575 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 DMAP1Q9NPF5 467 aaPredicted RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 IGSF9Q9P2J2 1179 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 GNEQ9Y223 722 aaKnown RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 TTC3P53804 2025 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CROCCQ5TZA2 2017 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 BRCA2P51587 3418 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 MATN2O00339 956 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 TIMM44O43615 452 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 DNAJA2O60884 412 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 MOCS2O96007 188 aaPredicted RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 RANBP1P43487 201 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 ANO4Q32M45 955 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 PITRM1Q5JRX3 1037 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 MAP3K21Q5TCX8 1036 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CYS1Q717R9 158 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 NT5DC4Q86YG4 428 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CRYBG2Q8N1P7 616 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 ARRDC4Q8NCT1 418 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 PPTC7Q8NI37 304 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 ATP6V1E2Q96A05 226 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CDCA5Q96FF9 252 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 STK39Q9UEW8 545 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 RAP2CQ9Y3L5 183 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 MYBPHLA2RUH7 354 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 C9IYK1 514 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CCL22O00626 93 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 DCLK1O15075 740 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 DLX3O60479 287 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 FAM200BP0CF97 657 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 SMPD1P17405 629 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 AFF1P51825 1210 aaKnown RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 SLC12A2P55011 1212 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 GJA9P57773 515 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 LIPMQ5VYY2 423 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 OLFML2BQ68BL8 750 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 TMEM135Q86UB9 458 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 ZNF354CQ86Y25 554 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 CEP97Q8IW35 865 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 LILRA2Q8N149 483 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 HASPINQ8TF76 798 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 EME1Q96AY2 570 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 PPWD1Q96BP3 646 aaKnown RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 ZNF560Q96MR9 790 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 EPAS1Q99814 870 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 TRPV6Q9H1D0 765 aa12.32□□□□□ -0.44
CLIP3-201ENST00000360535 EIF2B3Q9NR50 452 aaKnown RBP12.32□□□□□ -0.44
CLIP3-201ENST00000360535 C9JVG2 144 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 AURKAO14965 403 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 GRID2O43424 1007 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 DAB1O75553 588 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 STAU1O95793 577 aaKnown RBP12.31□□□□□ -0.44
CLIP3-201ENST00000360535 HNRNPDQ14103 355 aaKnown RBP12.31□□□□□ -0.44
CLIP3-201ENST00000360535 DPYSQ14117 519 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 ZBTB6Q15916 424 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 UGT2A3Q6UWM9 527 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 AMIGO2Q86SJ2 522 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 ADGRG6Q86SQ4 1221 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 RYBPQ8N488 228 aaPredicted RBP12.31□□□□□ -0.44
CLIP3-201ENST00000360535 LINC01465Q8N7H1 131 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 FICDQ9BVA6 458 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 ACOT9Q9Y305 439 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 TOMM70O94826 608 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 DDHD2O94830 711 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 LRIG2O94898 1065 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 FBXO21O94952 628 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 CYP2B6P20813 491 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 ME2P23368 584 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 GLDCP23378 1020 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 PPARGP37231 505 aaPredicted RBP12.31□□□□□ -0.44
CLIP3-201ENST00000360535 CHRNA4P43681 627 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 CDKL1Q00532 357 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 ITKQ08881 620 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 PDAP1Q13442 181 aaKnown RBP12.31□□□□□ -0.44
CLIP3-201ENST00000360535 PTK2BQ14289 1009 aa12.31□□□□□ -0.44
CLIP3-201ENST00000360535 KIAA0319Q5VV43 1072 aa12.31□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms