RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 ZNF781Q8N8C0 355 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 NAF1Q96HR8 494 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 CLPTM1LQ96KA5 538 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 THTPAQ9BU02 230 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 RBM22Q9NW64 420 aaKnown RBP eCLIP21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 MPP6Q9NZW5 540 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 CPSF2Q9P2I0 782 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 HS3ST4Q9Y661 456 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 TMEM114B3SHH9 223 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 E9PAM4 449 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 DDHD2O94830 711 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 HSPA4LO95757 839 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 MOCS2O96007 188 aaPredicted RBP21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 HLA-DQB2P05538 268 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 PGGT1BP53609 377 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 SREBF2Q12772 1141 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 USP4Q13107 963 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 RAPH1Q70E73 1250 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 RTN4RL1Q86UN2 441 aaPredicted RBP21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 ULK2Q8IYT8 1036 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 RTL3Q8N8U3 475 aaKnown RBP21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 CXorf56Q9H5V9 222 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 OXSMQ9NWU1 459 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 TLK1Q9UKI8 766 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 ANKRD6Q9Y2G4 727 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 CDY1Q9Y6F8 540 aa21.15■□□□□ 0.98
CCDC88B-203ENST00000359902 PAPOLAP51003 745 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 GEMP55040 296 aa21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 MLLT6P55198 1093 aaPredicted RBP21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 PRKCZQ05513 592 aa21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 ITGA7Q13683 1181 aa21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 USP10Q14694 798 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 ESRP1Q6NXG1 681 aaKnown RBP21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 CNTN4Q8IWV2 1026 aa21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 ZIC5Q96T25 663 aa21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 CDH19Q9H159 772 aa21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 NOD1Q9Y239 953 aa21.14■□□□□ 0.97
CCDC88B-203ENST00000359902 TBX10O75333 385 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 VAPBO95292 243 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 SAT1P21673 171 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 ARNTP27540 789 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 ARCN1P48444 511 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 MXRA7P84157 204 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 CCDC6Q16204 474 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 NET1Q7Z628 596 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 CCDC117Q8IWD4 279 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 STMN2Q93045 179 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 LBHD1Q9BQE6 289 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 GATA5Q9BWX5 397 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 ACE2Q9BYF1 805 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 COG4Q9H9E3 785 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 ABI2Q9NYB9 513 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 FNDC1Q4ZHG4 1894 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 F8W8V4 182 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 PHGDHO43175 533 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 PMPCBO75439 489 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 SBK3P0C264 359 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 SESN3P58005 492 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 NRG1Q02297 640 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 SDHAF4Q5VUM1 108 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 TIGD7Q6NT04 549 aaPredicted RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 POTEHQ6S545 545 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 EPGNQ6UW88 154 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 DENND6AQ8IWF6 608 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 SREK1Q8WXA9 508 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 ZCWPW1Q9H0M4 648 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 TASP1Q9H6P5 420 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 ENTPD7Q9NQZ7 604 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 STX18Q9P2W9 335 aaKnown RBP21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC7A8Q9UHI5 535 aa21.13■□□□□ 0.97
CCDC88B-203ENST00000359902 MEI4A8MW99 385 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 H2AFYO75367 372 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 OAZ2O95190 189 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 APOA4P06727 396 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC35E2BP0CK96 405 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 CST5P28325 142 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC34A1Q06495 639 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 CTBP1Q13363 440 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 RANBP10Q6VN20 620 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 POU5F2Q8N7G0 328 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 PPHLN1Q8NEY8 458 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 NRG4Q8WWG1 115 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 C1orf74Q96LT6 269 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 SERPINB11Q96P15 392 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 RGS18Q9NS28 235 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 SLC2A6Q9UGQ3 507 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 TCAF1Q9Y4C2 921 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 SQORQ9Y6N5 450 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 NYNRINQ9P2P1 1898 aaKnown RBP21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 DSC1Q08554 894 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 PIK3R6Q5UE93 754 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 GLB1LQ6UWU2 654 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 ZYG11AQ6WRX3 759 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 PAXIP1Q6ZW49 1069 aaPredicted RBP21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 MON1AQ86VX9 555 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 RDH11Q8TC12 318 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 DTX3LQ8TDB6 740 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 MRGPRX2Q96LB1 330 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 PPP1R2P1Q96PQ5 205 aa21.12■□□□□ 0.97
CCDC88B-203ENST00000359902 FTHL17Q9BXU8 183 aa21.12■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms