RNA–Protein interactions for RNA: ENST00000355766.5

VPS13A-201, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 753 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-201ENST00000355766 TTC7AQ9ULT0 858 aaPredicted RBP7.25□□□□□ -1.25
VPS13A-201ENST00000355766 YIPF1Q9Y548 306 aa7.25□□□□□ -1.25
VPS13A-201ENST00000355766 PCDHB4Q9Y5E5 795 aa7.25□□□□□ -1.25
VPS13A-201ENST00000355766 RALGAPA1Q6GYQ0 2036 aa7.25□□□□□ -1.25
VPS13A-201ENST00000355766 SMIM28A0A1B0GU29 152 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 SPAARA0A1B0GVQ0 90 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 EIF4E1BA6NMX2 242 aaKnown RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PATE3B3GLJ2 98 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 H0Y626 953 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PIRO00625 290 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PALMO75781 387 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 TRIM16O95361 564 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 APBB3O95704 486 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 FTLP02792 175 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PNMA6AP0CW24 399 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 VDRP11473 427 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 MMP8P22894 467 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 MCM3P25205 808 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 POLR2BP30876 1174 aaKnown RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 GBP1P32455 592 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 ARPP19P56211 112 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 LINC00310P59036 64 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 NOMO3P69849 1222 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 SIM1P81133 766 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 GRSF1Q12849 480 aaKnown RBP eCLIP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PTP4A2Q12974 167 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 UPP1Q16831 310 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 UAP1L1Q3KQV9 507 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 ITPRIPL2Q3MIP1 535 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 WDR72Q3MJ13 1102 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 SV2CQ496J9 727 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 TMEM196Q5HYL7 178 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 GLRA4Q5JXX5 417 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 SNAP47Q5SQN1 464 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 STXBP5Q5T5C0 1151 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 C9orf57Q5W0N0 161 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 LMBRD2Q68DH5 695 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 FSTL4Q6MZW2 842 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 TTLL10Q6ZVT0 673 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 MON1BQ7L1V2 547 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 ZNF605Q86T29 641 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 C11orf74Q86VG3 221 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 SPPL2CQ8IUH8 684 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PHACTR4Q8IZ21 702 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 TMEM86AQ8N2M4 240 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 SLC35G2Q8TBE7 412 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 FNIP1Q8TF40 1166 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 SLC20A1Q8WUM9 679 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 UBXN4Q92575 508 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 GOLGA1Q92805 767 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 HES6Q96HZ4 224 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PBKQ96KB5 322 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 LRRC3BQ96PB8 259 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PPP1R10Q96QC0 940 aaKnown RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 TLR10Q9BXR5 811 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 PACSIN1Q9BY11 444 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 TRIM10Q9UDY6 481 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 AFF4Q9UHB7 1163 aaKnown RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 EVLQ9UI08 416 aaPredicted RBP7.24□□□□□ -1.25
VPS13A-201ENST00000355766 MAFFQ9ULX9 164 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 BPTFQ12830 3046 aa7.24□□□□□ -1.25
VPS13A-201ENST00000355766 A0A0U1RQJ8 604 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 MYOCOSA0A1B0GUC4 107 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 TARSL2A2RTX5 802 aaKnown RBP7.23□□□□□ -1.25
VPS13A-201ENST00000355766 CCDC66A2RUB6 948 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 H7C4K7 107 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 SYN3O14994 580 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 THAP12O43422 761 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 NUAK1O60285 661 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 MOCS3O95396 460 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 PRAMEF12O95522 483 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 ATP1A1P05023 1023 aaKnown RBP7.23□□□□□ -1.25
VPS13A-201ENST00000355766 MMEP08473 750 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 KRT19P08727 400 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 AARSP49588 968 aaKnown RBP eCLIP7.23□□□□□ -1.25
VPS13A-201ENST00000355766 TAF6P49848 677 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 NAP1L1P55209 391 aaKnown RBP7.23□□□□□ -1.25
VPS13A-201ENST00000355766 OSTNP61366 133 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 IRX4P78413 519 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 SCAPQ12770 1279 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 LMAN2Q12907 356 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 MPP2Q14168 576 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 MRPL58Q14197 206 aaKnown RBP7.23□□□□□ -1.25
VPS13A-201ENST00000355766 RPS6KA1Q15418 735 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 CNGA2Q16280 664 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 CFAP221Q4G0U5 840 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 CTXN3Q4LDR2 81 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 SEZ6Q53EL9 994 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 GLE1Q53GS7 698 aaKnown RBP7.23□□□□□ -1.25
VPS13A-201ENST00000355766 LRRC38Q5VT99 294 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 ARHGAP17Q68EM7 881 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 SPOPLQ6IQ16 392 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 PLEKHA7Q6IQ23 1121 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 ZNF280DQ6N043 979 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 CCDC70Q6NSX1 233 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 RSRC2Q7L4I2 434 aaKnown RBP7.23□□□□□ -1.25
VPS13A-201ENST00000355766 ARCQ7LC44 396 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 PEX26Q7Z412 305 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 REC114Q7Z4M0 266 aa7.23□□□□□ -1.25
VPS13A-201ENST00000355766 PIP4P1Q86T03 277 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms