RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 TRIM42Q8IWZ5 723 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 ZNF683Q8IZ20 524 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 ATPAF2Q8N5M1 289 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 NSL1Q96IY1 281 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 BTBD10Q9BSF8 475 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 ZBED2Q9BTP6 218 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 CCDC28BQ9BUN5 200 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 ZYG11BQ9C0D3 744 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 ACSS3Q9H6R3 686 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 VANGL2Q9ULK5 521 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 LRCH1Q9Y2L9 728 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 YIPF1Q9Y548 306 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 INSL6Q9Y581 213 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 OBSL1O75147 1896 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 IGLV3-10A0A075B6K4 115 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 ERI2A8K979 691 aaKnown RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 NVLO15381 856 aaKnown RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 FGF18O76093 207 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 HMBSP08397 361 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 T-ENOLP0DO92 83 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 GCAP28676 217 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 RPA3P35244 121 aaPredicted RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 EPHB3P54753 998 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 MUM1Q2TAK8 710 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 FAM91A1Q658Y4 838 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 TIGD7Q6NT04 549 aaPredicted RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 LRRC8BQ6P9F7 803 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 ADGRD1Q6QNK2 874 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 IGDCC3Q8IVU1 814 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 UMODL1-AS1Q8N2C9 162 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 PDCD7Q8N8D1 485 aaKnown RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 WDR83Q9BRX9 315 aaKnown RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 CEP41Q9BYV8 373 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 SLC39A8Q9C0K1 460 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 NACA2Q9H009 215 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 MPP6Q9NZW5 540 aa13.06□□□□□ -0.32
CLK3-201ENST00000345005 UXTQ9UBK9 157 aaPredicted RBP13.06□□□□□ -0.32
CLK3-201ENST00000345005 DRGXA6NNA5 263 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 TRDMT1O14717 391 aaKnown RBP13.05□□□□□ -0.32
CLK3-201ENST00000345005 ZBTB24O43167 697 aaPredicted RBP13.05□□□□□ -0.32
CLK3-201ENST00000345005 PSMD3O43242 534 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 LILRB3O75022 631 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 SPAG7O75391 227 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 DNAJB2P25686 324 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 PTDSS1P48651 473 aaKnown RBP13.05□□□□□ -0.32
CLK3-201ENST00000345005 RPS6KA3P51812 740 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 NDST2P52849 883 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 MXRA7P84157 204 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 CDK18Q07002 472 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 MTM1Q13496 603 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 TAF1BQ53T94 588 aaPredicted RBP13.05□□□□□ -0.32
CLK3-201ENST00000345005 LVRNQ6Q4G3 990 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 OTOAQ7RTW8 1153 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 CLNKQ7Z7G1 428 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 CHSY1Q86X52 802 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 DEPDC1BQ8WUY9 529 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 AUTS2Q8WXX7 1259 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 DPF3Q92784 378 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 BADQ92934 168 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 CLP1Q92989 425 aaKnown RBP13.05□□□□□ -0.32
CLK3-201ENST00000345005 SIGLEC10Q96LC7 697 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 TEKT5Q96M29 485 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 CYTH2Q99418 400 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 TSC22D3Q99576 134 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 EBNA1BP2Q99848 306 aaKnown RBP13.05□□□□□ -0.32
CLK3-201ENST00000345005 ZBP1Q9H171 429 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 GBA3Q9H227 469 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 SLC24A3Q9HC58 644 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 TMEM248Q9NWD8 314 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 NKX1-2Q9UD57 310 aaPredicted RBP13.05□□□□□ -0.32
CLK3-201ENST00000345005 ZC3H7BQ9UGR2 993 aaKnown RBP13.05□□□□□ -0.32
CLK3-201ENST00000345005 SCOCQ9UIL1 159 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 CHD5Q8TDI0 1954 aa13.05□□□□□ -0.32
CLK3-201ENST00000345005 MIA3Q5JRA6 1907 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 IQANK1A0A1B0GTG1 560 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 SDR42E2A6NKP2 422 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 MATN3O15232 486 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 HAUS5O94927 633 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 JCHAINP01591 159 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 CTSAP10619 480 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 EN2P19622 333 aaPredicted RBP13.04□□□□□ -0.32
CLK3-201ENST00000345005 HARS2P49590 506 aaKnown RBP13.04□□□□□ -0.32
CLK3-201ENST00000345005 SH3BGRP55822 239 aaPredicted RBP13.04□□□□□ -0.32
CLK3-201ENST00000345005 TWF1Q12792 350 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 PLD1Q13393 1074 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 PRPSAP1Q14558 356 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 RAP1GAP2Q684P5 730 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 ANO7Q6IWH7 933 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 PSRC1Q6PGN9 363 aaPredicted RBP13.04□□□□□ -0.32
CLK3-201ENST00000345005 SLC30A9Q6PML9 568 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 ZNF534Q76KX8 674 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 ITIH5Q86UX2 942 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 KIRREL3Q8IZU9 778 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 DRAXINQ8NBI3 349 aaPredicted RBP13.04□□□□□ -0.32
CLK3-201ENST00000345005 ZSCAN18Q8TBC5 510 aaPredicted RBP13.04□□□□□ -0.32
CLK3-201ENST00000345005 CFAP36Q96G28 342 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 AGAP3Q96P47 875 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 TRAPPC9Q96Q05 1148 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 RETREG1Q9H6L5 497 aa13.04□□□□□ -0.32
CLK3-201ENST00000345005 MANSC1Q9H8J5 431 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms