RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 OMDQ99983 421 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 C11orf84Q9BUA3 381 aaPredicted RBP22.73■■□□□ 1.23
TRIM28-202ENST00000341753 DRC3Q9H069 523 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 ZBTB26Q9HCK0 441 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 CHRAC1Q9NRG0 131 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 UBP1Q9NZI7 540 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 SNX13Q9Y5W8 968 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 GMEB1Q9Y692 573 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 HBP1O60381 514 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 MPP3Q13368 585 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 KIZQ2M2Z5 673 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 CIB1Q99828 191 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 TMEM79Q9BSE2 394 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 ZNF385DQ9H6B1 395 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 LRRC40Q9H9A6 602 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 PRDM16Q9HAZ2 1276 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 ANLNQ9NQW6 1124 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 EIF2B3Q9NR50 452 aaKnown RBP22.73■■□□□ 1.23
TRIM28-202ENST00000341753 CIDEBQ9UHD4 219 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 BCAP29Q9UHQ4 241 aa22.73■■□□□ 1.23
TRIM28-202ENST00000341753 MPOP05164 745 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 PTPN9P43378 593 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 HSPA13P48723 471 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 TMEM62Q0P6H9 643 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 MTX3Q5HYI7 312 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 AFG1LQ8WV93 481 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 FAM149B1Q96BN6 582 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 MAF1Q9H063 256 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 ADAM28Q9UKQ2 775 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 LGALS2P05162 132 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 ARF4P18085 180 aaPredicted RBP22.72■■□□□ 1.23
TRIM28-202ENST00000341753 NDST2P52849 883 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 ARHGAP1Q07960 439 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 TTLL4Q14679 1199 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 LIPMQ5VYY2 423 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 KCNMB4Q86W47 210 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 LSMEM2Q8N112 164 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 ISL2Q96A47 359 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 SGF29Q96ES7 293 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 VPS28Q9UK41 221 aa22.72■■□□□ 1.23
TRIM28-202ENST00000341753 C11orf97A0A1B0GVM6 126 aaPredicted RBP22.71■■□□□ 1.23
TRIM28-202ENST00000341753 HACD1B0YJ81 288 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 CXCL11O14625 94 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 FOXD2O60548 495 aaPredicted RBP22.71■■□□□ 1.23
TRIM28-202ENST00000341753 IMPDH2P12268 514 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 ADCYAP1R1P41586 468 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 NSUN2Q08J23 767 aaKnown RBP eCLIP22.71■■□□□ 1.23
TRIM28-202ENST00000341753 ACBD5Q5T8D3 534 aaPredicted RBP22.71■■□□□ 1.23
TRIM28-202ENST00000341753 TMEM126BQ8IUX1 230 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 CENPIQ92674 756 aaPredicted RBP22.71■■□□□ 1.23
TRIM28-202ENST00000341753 DLG3Q92796 817 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 MPHOSPH6Q99547 160 aaKnown RBP22.71■■□□□ 1.23
TRIM28-202ENST00000341753 ERAP1Q9NZ08 941 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 KIAA1257Q9ULG3 409 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 RUVBL2Q9Y230 463 aaKnown RBP22.71■■□□□ 1.23
TRIM28-202ENST00000341753 AP4S1Q9Y587 144 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 ZNF487B1APH4 448 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 E7ENX8 843 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 EPHX2P34913 555 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 SULT1E1P49888 294 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 GLRA4Q5JXX5 417 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 LAYNQ6UX15 382 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 TMEM151AQ8N4L1 468 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 CPSF7Q8N684 471 aaKnown RBP22.71■■□□□ 1.23
TRIM28-202ENST00000341753 FAM110BQ8TC76 370 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 RNF139Q8WU17 664 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 APBA2Q99767 749 aa22.71■■□□□ 1.23
TRIM28-202ENST00000341753 GAS2O43903 313 aaKnown RBP22.7■■□□□ 1.22
TRIM28-202ENST00000341753 PRAMEP78395 509 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 IKBKEQ14164 716 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 DGKDQ16760 1214 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 KRT80Q6KB66 452 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 BORAQ6PGQ7 559 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 ZYG11AQ6WRX3 759 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 ASB7Q9H672 318 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 BFARQ9NZS9 450 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 GMPR2Q9P2T1 348 aaKnown RBP22.7■■□□□ 1.22
TRIM28-202ENST00000341753 TLK1Q9UKI8 766 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF510Q9Y2H8 683 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 TOMM70O94826 608 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF23P17027 643 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 PSME3P61289 254 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 PDAP1Q13442 181 aaKnown RBP22.7■■□□□ 1.22
TRIM28-202ENST00000341753 DIS3LQ8TF46 1054 aaKnown RBP22.7■■□□□ 1.22
TRIM28-202ENST00000341753 ZNF408Q9H9D4 720 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 THEGQ9P2T0 379 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 FZD10Q9ULW2 581 aa22.7■■□□□ 1.22
TRIM28-202ENST00000341753 FAF1Q9UNN5 650 aaPredicted RBP22.7■■□□□ 1.22
TRIM28-202ENST00000341753 BPTFQ12830 3046 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 TRIM38O00635 465 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 ATP6V1G1O75348 118 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 CKMT2P17540 419 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 TPP2P29144 1249 aaPredicted RBP22.69■■□□□ 1.22
TRIM28-202ENST00000341753 PRKAA1Q13131 559 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 USP10Q14694 798 aaKnown RBP22.69■■□□□ 1.22
TRIM28-202ENST00000341753 DEFB106AQ8N104 65 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 PLEKHG4BQ96PX9 1271 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 HAUS8Q9BT25 410 aa22.69■■□□□ 1.22
TRIM28-202ENST00000341753 NOL11Q9H8H0 719 aaKnown RBP22.69■■□□□ 1.22
TRIM28-202ENST00000341753 C9IYK1 514 aa22.69■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms