RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 NOTCH2Q04721 2471 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 M0QZQ0 153 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 MTHFRP42898 656 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 MAPK9P45984 424 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 SGCGQ13326 291 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 PEX6Q13608 980 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 TAF5Q15542 800 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CCDC153Q494R4 210 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 FCRL5Q96RD9 977 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 BRD9Q9H8M2 597 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 ZFP14Q9HCL3 533 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 CRTAC1Q9NQ79 661 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 DTLQ9NZJ0 730 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 MAPRE3Q9UPY8 281 aa6.97□□□□□ -1.29
SF3B1-201ENST00000335508 AP2A1O95782 977 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 OR56A5P0C7T3 313 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 CSF2RAP15509 400 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 PTPN3P26045 913 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 THOP1P52888 689 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 GAD2Q05329 585 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 ZNF844Q08AG5 666 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 INSCQ1MX18 579 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 TRMT11Q7Z4G4 463 aaKnown RBP6.96□□□□□ -1.29
SF3B1-201ENST00000335508 SCML4Q8N228 414 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 LINC01465Q8N7H1 131 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 FEM1CQ96JP0 617 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 SDCBP2Q9H190 292 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 CDHR5Q9HBB8 845 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 GOLGA8RI6L899 631 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 GABRDO14764 452 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 DDX3YO15523 660 aaKnown RBP6.96□□□□□ -1.29
SF3B1-201ENST00000335508 POP4O95707 220 aaKnown RBP6.96□□□□□ -1.29
SF3B1-201ENST00000335508 CORO1AP31146 461 aaKnown RBP6.96□□□□□ -1.29
SF3B1-201ENST00000335508 IL2P60568 153 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 GUCY1A3Q02108 690 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 GPM6BQ13491 265 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 UMODL1-AS1Q8N2C9 162 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 ARMC2Q8NEN0 867 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 DDX1Q92499 740 aaKnown RBP6.96□□□□□ -1.29
SF3B1-201ENST00000335508 CASP10Q92851 521 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 ELMO2Q96JJ3 720 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 MLXIPLQ9NP71 852 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 ZDHHC4Q9NPG8 344 aa6.96□□□□□ -1.29
SF3B1-201ENST00000335508 CHD4Q14839 1912 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 GRM6O15303 877 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 CCR3P51677 355 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 LRRC14Q15048 493 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 ZBTB6Q15916 424 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 KIAA0930Q6ICG6 404 aaPredicted RBP6.96□□□□□ -1.3
SF3B1-201ENST00000335508 RNF135Q8IUD6 432 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 CEP70Q8NHQ1 597 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 PHOSPHO2Q8TCD6 241 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 ZNF398Q8TD17 642 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 ARL8AQ96BM9 186 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 FGD4Q96M96 766 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 FAM111AQ96PZ2 611 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 UBP1Q9NZI7 540 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 ZFP69BQ9UJL9 534 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 TMEM59LQ9UK28 342 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 SLC13A4Q9UKG4 626 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 TBC1D30Q9Y2I9 924 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 R3HDM2Q9Y2K5 976 aaKnown RBP6.96□□□□□ -1.3
SF3B1-201ENST00000335508 STARD13Q9Y3M8 1113 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 TNKS1BP1Q9C0C2 1729 aaKnown RBP6.96□□□□□ -1.3
SF3B1-201ENST00000335508 TCP11X1B4DZS4 312 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 IFRD1O00458 451 aaPredicted RBP6.96□□□□□ -1.3
SF3B1-201ENST00000335508 GABRB2P47870 512 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 LIG3P49916 1009 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 PDGFRLQ15198 375 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 C6orf10Q5SRN2 563 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 LVRNQ6Q4G3 990 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 DENND1CQ8IV53 801 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 PPWD1Q96BP3 646 aaKnown RBP6.96□□□□□ -1.3
SF3B1-201ENST00000335508 TSGA13Q96PP4 275 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 GAS2L1Q99501 681 aaPredicted RBP6.96□□□□□ -1.3
SF3B1-201ENST00000335508 LMAN2LQ9H0V9 348 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 MANSC1Q9H8J5 431 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 WDR6Q9NNW5 1121 aaKnown RBP6.96□□□□□ -1.3
SF3B1-201ENST00000335508 SFMBT1Q9UHJ3 866 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 ERVW-1Q9UQF0 538 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 INSL5Q9Y5Q6 135 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 SLX4Q8IY92 1834 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 A0A1W2PQH9 124 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 PDZK1P1A8MUH7 402 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 MPOP05164 745 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 PSMB4P28070 264 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 SERINC3Q13530 473 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 UBXN11Q5T124 520 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 AGGF1Q8N302 714 aaeCLIP6.96□□□□□ -1.33e-6■□□□□ 9.3
SF3B1-201ENST00000335508 DCAF4L2Q8NA75 395 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 SMG8Q8ND04 991 aaKnown RBP6.96□□□□□ -1.3
SF3B1-201ENST00000335508 APOPT1Q96IL0 206 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 ACTR8Q9H981 624 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 SLC24A3Q9HC58 644 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 DOLKQ9UPQ8 538 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 ANKRD6Q9Y2G4 727 aa6.96□□□□□ -1.3
SF3B1-201ENST00000335508 GOLGA8TH3BQL2 631 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 NVLO15381 856 aaKnown RBP6.95□□□□□ -1.3
SF3B1-201ENST00000335508 SUPT3HO75486 399 aa6.95□□□□□ -1.3
SF3B1-201ENST00000335508 GJB5O95377 273 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms