RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PDZD2O15018 2839 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 HTTP42858 3142 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 PCNX1Q96RV3 2341 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 IGLV3-10A0A075B6K4 115 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 TMEM229AB2RXF0 380 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 FAM86B1E9PN63 330 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 M0QYT0 321 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 BCKDKO14874 412 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 PRICKLE3O43900 615 aaPredicted RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 RAD1O60671 282 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 PALMO75781 387 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 SEMA4FO95754 770 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 CCNE2O96020 404 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 HMGB1P09429 215 aaKnown RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 IFIT2P09913 472 aaKnown RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 FAM86B2P0C5J1 330 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 TSPY3P0CV98 308 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 TSPY8P0CW00 308 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 GIFP27352 417 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 TPMTP51580 245 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 DLX5P56178 289 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 HDAC1Q13547 482 aaPredicted RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 DPYSQ14117 519 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 STARD3Q14849 445 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 RAB3GAP1Q15042 981 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 HNRNPA1L2Q32P51 320 aaKnown RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 GARNL3Q5VVW2 1013 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 SP5Q6BEB4 398 aaPredicted RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 SPRED1Q7Z699 444 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 FGD2Q7Z6J4 655 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 PRPF39Q86UA1 669 aaKnown RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 PARGQ86W56 976 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 XYLT1Q86Y38 959 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 SLC13A5Q86YT5 568 aaPredicted RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 MIB1Q86YT6 1006 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 PLEKHM2Q8IWE5 1019 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 GALNT12Q8IXK2 581 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 RBMXL3Q8N7X1 1067 aaKnown RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 FAM169BQ8N8A8 192 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 TRIML1Q8N9V2 468 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 CPT1CQ8TCG5 803 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 RNF138Q8WVD3 245 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 MRPS31Q92665 395 aaKnown RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 TCTN2Q96GX1 697 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 MYO19Q96H55 970 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 FER1L6-AS2Q96M78 137 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 AIFM3Q96NN9 605 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 DACH2Q96NX9 599 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 NACC1Q96RE7 527 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 TEKT3Q9BXF9 490 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 RNF26Q9BY78 433 aaPredicted RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 FAM129AQ9BZQ8 928 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 MAGEF1Q9HAY2 307 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 CYP3A43Q9HB55 503 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 FBXO28Q9NVF7 368 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 GAR1Q9NY12 217 aaKnown RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 MARCH2Q9P0N8 246 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 FCF1Q9Y324 198 aaKnown RBP1.62□□□□□ -2.15
LINC00643-201ENST00000334389 DUSP10Q9Y6W6 482 aa1.62□□□□□ -2.15
LINC00643-201ENST00000334389 A6NCN8 305 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 LRRC14BA6NHZ5 514 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SLC38A8A6NNN8 435 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 C16orf96A6NNT2 1141 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ZNF487B1APH4 448 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 C9orf172C9J069 976 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SEC24AO95486 1093 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 WDPCPO95876 746 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 HPP00738 406 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ITGB3P05106 788 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ZNF286BP0CG31 522 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 CES1P23141 567 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KELP23276 732 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 AKT2P31751 481 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PLA2G4AP47712 749 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 VAV2P52735 878 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 C21orf59P57076 290 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TCTAP57738 103 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 RPL26P61254 145 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 GALNT1Q10472 559 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ACOX1Q15067 660 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 STILQ15468 1287 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ZNF284Q2VY69 593 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TMEM164Q5U3C3 297 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MANEALQ5VSG8 457 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SLFN12LQ6IEE8 588 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MRPL14Q6P1L8 145 aaKnown RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 CEP85Q6P2H3 762 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TMC5Q6UXY8 1006 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ASB18Q6ZVZ8 466 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 TMTC3Q6ZXV5 915 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 SDK1Q7Z5N4 2213 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KCNMB4Q86W47 210 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MICU3Q86XE3 530 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 PHC2Q8IXK0 858 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KLHDC8BQ8IXV7 354 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 MCUQ8NE86 351 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 ZNF397Q8NF99 534 aaPredicted RBP1.61□□□□□ -2.15
LINC00643-201ENST00000334389 FAM200AQ8TCP9 573 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 OR1E3Q8WZA6 343 aa1.61□□□□□ -2.15
LINC00643-201ENST00000334389 KIAA1143Q96AT1 154 aaPredicted RBP1.61□□□□□ -2.15
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms