RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 ELP4Q96EB1 424 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 RNF125Q96EQ8 232 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 EYA3Q99504 573 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 CLSTN3Q9BQT9 956 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 TMEM79Q9BSE2 394 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 AGXT2Q9BYV1 514 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 PAIP1Q9H074 479 aaKnown RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 LMAN2LQ9H0V9 348 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 EPHX3Q9H6B9 360 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 AAMDCQ9H7C9 122 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 PREBQ9HCU5 417 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 PNRC2Q9NPJ4 139 aaKnown RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ATP8A2Q9NTI2 1148 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 TRNAU1APQ9NX07 287 aaKnown RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 SLC25A10Q9UBX3 287 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ARHGAP26Q9UNA1 814 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 ZSCAN21Q9Y5A6 473 aaPredicted RBP3.61□□□□□ -1.83
HMGB1-201ENST00000326004 TTC3P53804 2025 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 DISP3Q9P2K9 1392 aa3.61□□□□□ -1.83
HMGB1-201ENST00000326004 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 GAGE12JA6NER3 117 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF814B7Z6K7 855 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 TNPO2O14787 897 aaKnown RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 CEP104O60308 925 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 WDHD1O75717 1129 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ADAP00813 363 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 IL1AP01583 271 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 UNGP13051 313 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 PAFAH1B1P43034 410 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 PTPN9P43378 593 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ABCG1P45844 678 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ALDH7A1P49419 539 aaKnown RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 BLKP51451 505 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 NR1H2P55055 460 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 MPP1Q00013 466 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 RBMS2Q15434 407 aaKnown RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 INPP5JQ15735 1006 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 PXDC1Q5TGL8 231 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ACAD10Q6JQN1 1059 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 SHC4Q6S5L8 630 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 SLC22A25Q6T423 547 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 IL20RBQ6UXL0 311 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 PRSS45Q7RTY3 260 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 MON1AQ86VX9 555 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF575Q86XF7 245 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 CPXM2Q8N436 756 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ARFGAP1Q8N6T3 406 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 DNAAF1Q8NEP3 725 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ZMIZ2Q8NF64 920 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 RFFLQ8WZ73 363 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ZUFSPQ96AP4 578 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 EME1Q96AY2 570 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ZBTB10Q96DT7 871 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 RRP36Q96EU6 259 aaKnown RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF419Q96HQ0 510 aaPredicted RBP3.6□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF333Q96JL9 665 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 VEZTQ9HBM0 779 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 MSRB1Q9NZV6 116 aa3.6□□□□□ -1.83
HMGB1-201ENST00000326004 A0A0A0MQY5 61 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 ARHGAP10A1A4S6 786 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 TARSL2A2RTX5 802 aaKnown RBP3.59□□□□□ -1.83
HMGB1-201ENST00000326004 ZC3H11AO75152 810 aaKnown RBP eCLIP3.59□□□□□ -1.83
HMGB1-201ENST00000326004 TOP3BO95985 862 aaKnown RBP3.59□□□□□ -1.83
HMGB1-201ENST00000326004 F9P00740 461 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 IFNA2P01563 188 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 TMEM191BP0C7N4 346 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 MYZAPP0CAP1 466 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 CYP19A1P11511 503 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-201ENST00000326004 ABCD3P28288 659 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 PLCD1P51178 756 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 GAD2Q05329 585 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 PRICKLE4Q2TBC4 344 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 SLC4A8Q2Y0W8 1093 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 SYTL3Q4VX76 610 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 TBC1D9BQ66K14 1250 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 NCAPH2Q6IBW4 605 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 C17orf99Q6UX52 265 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 B4GALNT4Q76KP1 1039 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 RRM2BQ7LG56 351 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 TRAPPC11Q7Z392 1133 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 PIP4P1Q86T03 277 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 CMASQ8NFW8 434 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-201ENST00000326004 NFKBIDQ8NI38 313 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 BICD2Q8TD16 824 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 TMEM170AQ8WVE7 144 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 MAF1Q9H063 256 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 ZHX3Q9H4I2 956 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 SEMA4BQ9NPR2 832 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-201ENST00000326004 DECR2Q9NUI1 292 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 IL1RAPL1Q9NZN1 696 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 NLKQ9UBE8 527 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 ZNF70Q9UC06 446 aaPredicted RBP3.59□□□□□ -1.83
HMGB1-201ENST00000326004 PCDHA12Q9UN75 941 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 HS3ST3B1Q9Y662 390 aa3.59□□□□□ -1.83
HMGB1-201ENST00000326004 CCDC180Q9P1Z9 1646 aa3.59□□□□□ -1.84
HMGB1-201ENST00000326004 A0A096LPK6 155 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 B4E171 279 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 FAM157AC9JC47 383 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 MDM4O15151 490 aa3.58□□□□□ -1.84
HMGB1-201ENST00000326004 ATG13O75143 517 aa3.58□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms