RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 CLPTM1O96005 669 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 MYL4P12829 197 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 RALGDSQ12967 914 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 DBN1Q16643 649 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 CCL15Q16663 113 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 INSCQ1MX18 579 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 KIF19Q2TAC6 998 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 AGKQ53H12 422 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 C6orf52Q5T4I8 152 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 STEAP4Q687X5 459 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 ARHGAP36Q6ZRI8 547 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 LDB1Q86U70 411 aaPredicted RBP13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 PDSS2Q86YH6 399 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 CEP70Q8NHQ1 597 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 POMKQ9H5K3 350 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 STN1Q9H668 368 aaKnown RBP13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 ARHGEF38Q9NXL2 777 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 BCAP29Q9UHQ4 241 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 IPPQ9Y573 584 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 DNAH12Q6ZR08 3092 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 ANKRD12Q6UB98 2062 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 C9JVG2 144 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 ALDH1A2O94788 518 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 TOMM70O94826 608 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 HDCP19113 662 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 CASP2P42575 452 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 GLUD2P49448 558 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 PRKAA1Q13131 559 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 FAM219BQ5XKK7 198 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 KRT80Q6KB66 452 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 TFAP2DQ7Z6R9 452 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 CRYBG2Q8N1P7 616 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 PAF1Q8N7H5 531 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 COLEC11Q9BWP8 271 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 EFCAB1Q9HAE3 211 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 TRPC7Q9HCX4 862 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 RAP2CQ9Y3L5 183 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 SNX13Q9Y5W8 968 aa13.09□□□□□ -0.31
HMGCS1-201ENST00000325110 MSI1O43347 362 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 CCNT2O60583 730 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 B3GAT3O94766 335 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 CHN2P52757 468 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 SNX17Q15036 470 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 MARCH8Q5T0T0 291 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 LIPMQ5VYY2 423 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 FAM91A1Q658Y4 838 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 PPHLN1Q8NEY8 458 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 DIS3LQ8TF46 1054 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 CENPIQ92674 756 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 DNAJC1Q96KC8 554 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 NPY6RQ99463 290 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 MLPHQ9BV36 600 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 MRPL1Q9BYD6 325 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 IL22Q9GZX6 179 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 IGSF9Q9P2J2 1179 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 SLC2A6Q9UGQ3 507 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 M0QZ92 97 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 ATP5BP06576 529 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 ME2P23368 584 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 MAXP61244 160 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 EPGNQ6UW88 154 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 RNF111Q6ZNA4 994 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 FAM35AQ86V20 835 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 IFNEQ86WN2 208 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 ARHGAP18Q8N392 663 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 TRIML2Q8N7C3 387 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 HDAC11Q96DB2 347 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 PCED1BQ96HM7 432 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 MPP4Q96JB8 637 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 TSPYL2Q9H2G4 693 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 PRM3Q9NNZ6 103 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 RBM22Q9NW64 420 aaKnown RBP eCLIP13.08□□□□□ -0.327e-11■■■■□ 25.4
HMGCS1-201ENST00000325110 TSR3Q9UJK0 312 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 AURKCQ9UQB9 309 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 AP4B1Q9Y6B7 739 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 POLR2AP24928 1970 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 SSC5DA1L4H1 1573 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 SF3B1O75533 1304 aaKnown RBP eCLIP13.08□□□□□ -0.325e-6■■■■□ 20.1
HMGCS1-201ENST00000325110 RRN3P2A6NIE6 340 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 KCNU1A8MYU2 1149 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 SEC24DO94855 1032 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 SUPT7LO94864 414 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 POMCP01189 267 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 PPARGP37231 505 aaPredicted RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 ETFBP38117 255 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 HARS2P49590 506 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 AFF1P51825 1210 aaKnown RBP13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 NAB1Q13506 487 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 SLC12A1Q13621 1099 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 RPS6KA2Q15349 733 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 CMPK2Q5EBM0 449 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 TRIM67Q6ZTA4 783 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 RTKNQ9BST9 563 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 PCDHAC1Q9H158 963 aa13.08□□□□□ -0.32
HMGCS1-201ENST00000325110 ZCWPW2A0A1B0GU75 182 aa13.07□□□□□ -0.32
HMGCS1-201ENST00000325110 G3V2L1 256 aa13.07□□□□□ -0.32
HMGCS1-201ENST00000325110 AHSGP02765 367 aa13.07□□□□□ -0.32
HMGCS1-201ENST00000325110 OLFML2BQ68BL8 750 aa13.07□□□□□ -0.32
HMGCS1-201ENST00000325110 AFAP1L2Q8N4X5 818 aa13.07□□□□□ -0.32
HMGCS1-201ENST00000325110 ARRDC4Q8NCT1 418 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms