RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 ZC3H12BQ5HYM0 836 aaKnown RBP15.58■□□□□ 0.08
SHH-201ENST00000297261 FAM182AQ5T1J6 154 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 B3GNT9Q6UX72 402 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 RNF180Q86T96 592 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 EFHBQ8N7U6 833 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 NETO2Q8NC67 525 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 ZBED2Q9BTP6 218 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 CEP44Q9C0F1 390 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 STK39Q9UEW8 545 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 SIGLEC16A6NMB1 481 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 RHOBTB1O94844 696 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 GSSP48637 474 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 RBBP8Q99708 897 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 NPAS2Q99743 824 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 EBF4Q9BQW3 602 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 OSBPL11Q9BXB4 747 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 REXO4Q9GZR2 422 aaKnown RBP15.58■□□□□ 0.08
SHH-201ENST00000297261 POMPQ9Y244 141 aa15.58■□□□□ 0.08
SHH-201ENST00000297261 MYH15Q9Y2K3 1946 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 BIRC5O15392 142 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 ATP6V1E1P36543 226 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 CYP1B1Q16678 543 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 RNASEH2BQ5TBB1 312 aaKnown RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 PHF13Q86YI8 300 aaPredicted RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 ACE2Q9BYF1 805 aaPredicted RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 NOL11Q9H8H0 719 aaKnown RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 EURLQ9NYK6 297 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 PDE4DIPQ5VU43 2346 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 KLHL33A6NCF5 533 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 TMEM191CA6NGB0 347 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 B3GAT3O94766 335 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 ALOX12P18054 663 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 GRIA4P48058 902 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 ADCY4Q8NFM4 1077 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 CELF6Q96J87 481 aaKnown RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 SERAC1Q96JX3 654 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 LENG8Q96PV6 779 aaPredicted RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 UBE2OQ9C0C9 1292 aaKnown RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 PARVBQ9HBI1 364 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 SCN9AQ15858 1988 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 TRIM38O00635 465 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 ANXA9O76027 345 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 MICAL2O94851 1124 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 RBP1P09455 135 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 CHRM3P20309 590 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 GABRB2P47870 512 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 INHBEP58166 350 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 POLD3Q15054 466 aaPredicted RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 EMC10Q5UCC4 262 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 DNAJC14Q6Y2X3 702 aaPredicted RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 ADGRF2Q8IZF7 708 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 OR52K1Q8NGK4 314 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 RP9Q8TA86 221 aaKnown RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 C7orf26Q96N11 449 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 EGFL7Q9UHF1 273 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 MRPL42Q9Y6G3 142 aaKnown RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 ACO1P21399 889 aaKnown RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 JAK1P23458 1154 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 TDRPQ86YL5 185 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 JOSD2Q8TAC2 188 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 OSCP1Q8WVF1 389 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 MAGED4Q96JG8 741 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 RNF157Q96PX1 679 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 TBCBQ99426 244 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 IMPAD1Q9NX62 359 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 ITGB1BP2Q9UKP3 347 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 PRPF19Q9UMS4 504 aaKnown RBP15.57■□□□□ 0.08
SHH-201ENST00000297261 PCDHGB4Q9UN71 923 aa15.57■□□□□ 0.08
SHH-201ENST00000297261 SYNDIG1LA6NDD5 238 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 GPR25O00155 361 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 GPR182O15218 404 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 TIPRLO75663 272 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 GSNP06396 782 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 LRRC74AQ0VAA2 488 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 EGFLAMQ63HQ2 1017 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 PARP8Q8N3A8 854 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 FIG4Q92562 907 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 ZNF395Q9H8N7 513 aaPredicted RBP15.56■□□□□ 0.08
SHH-201ENST00000297261 LNPEPQ9UIQ6 1025 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 CHRNB2P17787 502 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 TSPAN8P19075 237 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 CCNA2P20248 432 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 ECHS1P30084 290 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 CSE1LP55060 971 aaKnown RBP15.56■□□□□ 0.08
SHH-201ENST00000297261 VAC14Q08AM6 782 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 ZNF470Q6ECI4 717 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 SYTL1Q8IYJ3 562 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 BANPQ8N9N5 519 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 FAM156AQ8NDB6 213 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 BLOC1S5Q8TDH9 187 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 CERS2Q96G23 380 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 BORCS6Q96GS4 357 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 PGAP2Q9UHJ9 254 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 TSHRP16473 764 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 PSMB4P28070 264 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 ARHGAP1Q07960 439 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 ZNF516Q92618 1163 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 BORCS5Q969J3 196 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 RAD21L1Q9H4I0 556 aa15.56■□□□□ 0.08
SHH-201ENST00000297261 WDCPQ9H6R7 721 aa15.56■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 72 ms