RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 ATP6AP2A0A1C7CYW4 349 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 XPO1O14980 1071 aaKnown RBP12.85□□□□□ -0.35
LIG1-201ENST00000263274 ATP6AP2O75787 350 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 ATP5BP06576 529 aaKnown RBP12.85□□□□□ -0.35
LIG1-201ENST00000263274 FAM163BP0C2L3 166 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 FAM200BP0CF97 657 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 PTPN1P18031 435 aaKnown RBP12.85□□□□□ -0.35
LIG1-201ENST00000263274 HDCP19113 662 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 HOXA11P31270 313 aaPredicted RBP12.85□□□□□ -0.35
LIG1-201ENST00000263274 SOX4Q06945 474 aaPredicted RBP12.85□□□□□ -0.35
LIG1-201ENST00000263274 ZBTB17Q13105 803 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 TLR1Q15399 786 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 ARL13BQ3SXY8 428 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 OLFML2BQ68BL8 750 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 GK5Q6ZS86 529 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 CEP70Q8NHQ1 597 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 LENG1Q96BZ8 264 aaPredicted RBP12.85□□□□□ -0.35
LIG1-201ENST00000263274 RHOBTB2Q9BYZ6 727 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 MAF1Q9H063 256 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 TKTL2Q9H0I9 626 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 CDKN2AIPQ9NXV6 580 aaPredicted RBP12.85□□□□□ -0.35
LIG1-201ENST00000263274 DDX43Q9NXZ2 648 aaKnown RBP12.85□□□□□ -0.35
LIG1-201ENST00000263274 GJD2Q9UKL4 321 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 PCDHGB4Q9UN71 923 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 LZTS1Q9Y250 596 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 ACOT9Q9Y305 439 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 PCDHGB5Q9Y5G0 923 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 SF3B1O75533 1304 aaKnown RBP eCLIP12.85□□□□□ -0.354e-6■■■■■ 81.2
LIG1-201ENST00000263274 ANKRD12Q6UB98 2062 aa12.85□□□□□ -0.35
LIG1-201ENST00000263274 AP2A1O95782 977 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 MPOP05164 745 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 NPR3P17342 541 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 MTTPP55157 894 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 CACNB2Q08289 660 aaPredicted RBP12.84□□□□□ -0.35
LIG1-201ENST00000263274 FSTL5Q8N475 847 aaPredicted RBP12.84□□□□□ -0.35
LIG1-201ENST00000263274 EFCAB1Q9HAE3 211 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 ANLNQ9NQW6 1124 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 DNAJB4Q9UDY4 337 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 OR12D3Q9UGF7 316 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 PSMD13Q9UNM6 376 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 CLEC11AQ9Y240 323 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 FER1L6Q2WGJ9 1857 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 G3V2L1 256 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 CD4P01730 458 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 GRIA2P42262 883 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 PRAMEP78395 509 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 PDAP1Q13442 181 aaKnown RBP12.84□□□□□ -0.35
LIG1-201ENST00000263274 PTK2BQ14289 1009 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 NOL9Q5SY16 702 aaKnown RBP12.84□□□□□ -0.35
LIG1-201ENST00000263274 ARHGAP17Q68EM7 881 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 ITPRIPL1Q6GPH6 555 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 PGM2L1Q6PCE3 622 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 NPWQ8N729 165 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 CENPIQ92674 756 aaPredicted RBP12.84□□□□□ -0.35
LIG1-201ENST00000263274 DTNBP1Q96EV8 351 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 IFT43Q96FT9 208 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 PCDHAC1Q9H158 963 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 ZNF195O14628 629 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 XPOTO43592 962 aaKnown RBP12.84□□□□□ -0.35
LIG1-201ENST00000263274 TPST1O60507 370 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 DDHD2O94830 711 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 ME2P23368 584 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 MS4A2Q01362 244 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 RALGDSQ12967 914 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 ITGA7Q13683 1181 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 ANO4Q32M45 955 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 NT5DC4Q86YG4 428 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 ANKRD13AQ8IZ07 590 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 LRRC52Q8N7C0 313 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 TRIML2Q8N7C3 387 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 HASPINQ8TF76 798 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 NAT14Q8WUY8 206 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 PLEKHG4BQ96PX9 1271 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 FICDQ9BVA6 458 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 FSD1LQ9BXM9 530 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 DUSP16Q9BY84 665 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 DMAP1Q9NPF5 467 aaPredicted RBP12.84□□□□□ -0.35
LIG1-201ENST00000263274 MID2Q9UJV3 735 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 GNEQ9Y223 722 aaKnown RBP12.84□□□□□ -0.35
LIG1-201ENST00000263274 RAP2CQ9Y3L5 183 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 SNX13Q9Y5W8 968 aa12.84□□□□□ -0.35
LIG1-201ENST00000263274 KCNU1A8MYU2 1149 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 GLUD2P49448 558 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 AGKQ53H12 422 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 ESRP1Q6NXG1 681 aaKnown RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 AMIGO2Q86SJ2 522 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 C16orf70Q9BSU1 422 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 NFKBIZQ9BYH8 718 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 EPS15L1Q9UBC2 864 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 ZNF646O15015 1829 aaPredicted RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 ZCWPW2A0A1B0GU75 182 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 ZSCAN9O15535 394 aaPredicted RBP12.83□□□□□ -0.36
LIG1-201ENST00000263274 SLC4A1P02730 911 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 IMPDH2P12268 514 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 LILRA4P59901 499 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 CDK18Q07002 472 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 PRKAA1Q13131 559 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 SV2CQ496J9 727 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 LIPMQ5VYY2 423 aa12.83□□□□□ -0.36
LIG1-201ENST00000263274 LRRC8EQ6NSJ5 796 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms