RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 PFKPQ01813 784 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 CYP1B1Q16678 543 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 RNF135Q8IUD6 432 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 CELF6Q96J87 481 aaKnown RBP13.86□□□□□ -0.19
LDLR-201ENST00000252444 ZFP42Q96MM3 310 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 TCF12Q99081 682 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 MINDY3Q9H8M7 445 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 SMPD4Q9NXE4 827 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 CNTN6Q9UQ52 1028 aa13.86□□□□□ -0.19
LDLR-201ENST00000252444 FAM107AO95990 144 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 HTR1BP28222 390 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 RPL26P61254 145 aaKnown RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 ACOX1Q15067 660 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 ZNF438Q7Z4V0 828 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 DNAAF5Q86Y56 855 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 TMEM139Q8IV31 216 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 BORCS6Q96GS4 357 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 OMDQ99983 421 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 FAM126AQ9BYI3 521 aaPredicted RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 PTPRHQ9HD43 1115 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 AKAP7Q9P0M2 348 aaPredicted RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 RPL26L1Q9UNX3 145 aaKnown RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 NAALADL1Q9UQQ1 740 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 ANKS1BQ7Z6G8 1248 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 EBNA1BP2Q99848 306 aaKnown RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 IGFLR1Q9H665 355 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 FBRSQ9HAH7 460 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 CHORDC1Q9UHD1 332 aaPredicted RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 ILVBLA1L0T0 632 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 DYTNA2CJ06 578 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 F5H423 210 aaPredicted RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 BIRC5O15392 142 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 CHRNB2P17787 502 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 CDH2P19022 906 aaPredicted RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 SUOXP51687 545 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 AP2B1P63010 937 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 RBFAQ8N0V3 343 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 HINFPQ9BQA5 517 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 WDR41Q9HAD4 459 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 SSU72Q9NP77 194 aaKnown RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 SAE1Q9UBE0 346 aaPredicted RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 RUVBL2Q9Y230 463 aaKnown RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 ADGRA3Q8IWK6 1321 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 ALOX15BO15296 676 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 NDUFS2O75306 463 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 POP4O95707 220 aaKnown RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 CPA3P15088 417 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 ZNF132P52740 706 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 TERF2Q15554 542 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 ZBTB41Q5SVQ8 909 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 C1orf74Q96LT6 269 aa13.85□□□□□ -0.19
LDLR-201ENST00000252444 PPP1R10Q96QC0 940 aaKnown RBP13.85□□□□□ -0.19
LDLR-201ENST00000252444 PCDH8O95206 1070 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 NDST3O95803 873 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 IL10P22301 178 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 MGAT1P26572 445 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 CDKN2BP42772 138 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 CYP2A13Q16696 494 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 AAK1Q2M2I8 961 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 NEPROQ6NW34 567 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 HS6ST3Q8IZP7 471 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 IGSF21Q96ID5 467 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 TCP11X1B4DZS4 312 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 CASP2P42575 452 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 ASTE1Q2TB18 679 aaPredicted RBP13.84□□□□□ -0.19
LDLR-201ENST00000252444 CLEC20AQ6ZU45 233 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 PIP4K2CQ8TBX8 421 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 KCTD15Q96SI1 283 aaPredicted RBP13.84□□□□□ -0.19
LDLR-201ENST00000252444 PRMT1Q99873 361 aaKnown RBP13.84□□□□□ -0.19
LDLR-201ENST00000252444 PRDM12Q9H4Q4 367 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 STOML1Q9UBI4 398 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 NRXN2Q9P2S2 1712 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 LRCH4O75427 683 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 HSPA1AP0DMV8 641 aaKnown RBP13.84□□□□□ -0.19
LDLR-201ENST00000252444 HSPA1BP0DMV9 641 aaKnown RBP13.84□□□□□ -0.19
LDLR-201ENST00000252444 RAP1GDS1P52306 607 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 LRRC32Q14392 662 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 SERPINA13PQ6UXR4 307 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 ZNF461Q8TAF7 563 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 ZNF398Q8TD17 642 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 STYXQ8WUJ0 223 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 LENG1Q96BZ8 264 aaPredicted RBP13.84□□□□□ -0.19
LDLR-201ENST00000252444 ZFP14Q9HCL3 533 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 CASS4Q9NQ75 786 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 GOT1P17174 413 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 RPL22P35268 128 aaKnown RBP13.84□□□□□ -0.19
LDLR-201ENST00000252444 PTPN5P54829 565 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 GNA12Q03113 381 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 CRY1Q16526 586 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 C2CD6Q53TS8 623 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 KDELC2Q7Z4H8 507 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 ADAMTSL2Q86TH1 951 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 PRELID2Q8N945 189 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 PRICKLE1Q96MT3 831 aaPredicted RBP13.84□□□□□ -0.19
LDLR-201ENST00000252444 ANKZF1Q9H8Y5 726 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 SLC27A5Q9Y2P5 690 aa13.84□□□□□ -0.19
LDLR-201ENST00000252444 CLDN5O00501 218 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 ATG13O75143 517 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 DNTTP04053 509 aa13.83□□□□□ -0.19
LDLR-201ENST00000252444 SATB1Q01826 763 aa13.83□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms