RNA–Protein interactions for RNA: ENST00000216456.6

VTI1B-201, Transcript of vesicle transport through interaction with t-SNAREs 1B, humanhuman

TSL 1 (best)

Gene VTI1B, Length 1,103 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1B-201ENST00000216456 NEU3Q9UQ49 428 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 PAXBP1Q9Y5B6 917 aa22.62■■□□□ 1.21
VTI1B-201ENST00000216456 A0A1W2PQU0 124 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 ILVBLA1L0T0 632 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 C2CD4BA6NLJ0 364 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 LEFTY1O75610 366 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 ADRA1BP35368 520 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 DNA2P51530 1060 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 GNA12Q03113 381 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 NCAPHQ15003 741 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 MANEALQ5VSG8 457 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 SEL1L3Q68CR1 1132 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 APTXQ7Z2E3 356 aaKnown RBP22.61■■□□□ 1.21
VTI1B-201ENST00000216456 NETO2Q8NC67 525 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 DNAI1Q9UI46 699 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 ZFR2Q9UPR6 939 aaKnown RBP22.61■■□□□ 1.21
VTI1B-201ENST00000216456 WASF2Q9Y6W5 498 aa22.61■■□□□ 1.21
VTI1B-201ENST00000216456 ZFYVE26Q68DK2 2539 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 DOCK4Q8N1I0 1966 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 RFC1P35251 1148 aaPredicted RBP22.6■■□□□ 1.21
VTI1B-201ENST00000216456 STAT1P42224 750 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 SERPINH1P50454 418 aaKnown RBP22.6■■□□□ 1.21
VTI1B-201ENST00000216456 HDAC4P56524 1084 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 RWDD4Q6NW29 188 aaKnown RBP22.6■■□□□ 1.21
VTI1B-201ENST00000216456 PROSER1Q86XN7 944 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 PYROXD2Q8N2H3 581 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 MFSD2AQ8NA29 543 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 OR6K2Q8NGY2 324 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 SKA1Q96BD8 255 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 CNDP2Q96KP4 475 aaKnown RBP22.6■■□□□ 1.21
VTI1B-201ENST00000216456 TM6SF2Q9BZW4 377 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 KDM4CQ9H3R0 1056 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 OR12D3Q9UGF7 316 aa22.6■■□□□ 1.21
VTI1B-201ENST00000216456 LIMA1Q9UHB6 759 aaKnown RBP22.6■■□□□ 1.21
VTI1B-201ENST00000216456 LGALS16A8MUM7 142 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 DFNA5O60443 496 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 ATP1A3P13637 1013 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 SDC4P31431 198 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 CLDN2P57739 230 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 UBXN1Q04323 297 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 CLEC16AQ2KHT3 1053 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 ZNF284Q2VY69 593 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 SASS6Q6UVJ0 657 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 KDM7AQ6ZMT4 941 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 ARCQ7LC44 396 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 KANSL1Q7Z3B3 1105 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 NLRP14Q86W24 1093 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 TMIEQ8NEW7 156 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 FAM172AQ8WUF8 416 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 PREBQ9HCU5 417 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 ADAM22Q9P0K1 906 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 IL36AQ9UHA7 158 aa22.59■■□□□ 1.21
VTI1B-201ENST00000216456 ENC1O14682 589 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 LRIG2O94898 1065 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 MYL5Q02045 173 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 STAT4Q14765 748 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 SLC45A4Q5BKX6 768 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 WDR59Q6PJI9 974 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 ERN2Q76MJ5 926 aaKnown RBP22.58■■□□□ 1.21
VTI1B-201ENST00000216456 TMEM145Q8NBT3 493 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 NEK11Q8NG66 645 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 VOPP1Q96AW1 172 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 SEPT11Q9NVA2 429 aaKnown RBP22.58■■□□□ 1.21
VTI1B-201ENST00000216456 ANO10Q9NW15 660 aa22.58■■□□□ 1.21
VTI1B-201ENST00000216456 PPARGC1AQ9UBK2 798 aaKnown RBP22.58■■□□□ 1.21
VTI1B-201ENST00000216456 FARP1Q9Y4F1 1045 aaPredicted RBP22.58■■□□□ 1.21
VTI1B-201ENST00000216456 PCDH8O95206 1070 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 LDOC1O95751 146 aaPredicted RBP22.57■■□□□ 1.2
VTI1B-201ENST00000216456 PRNPP04156 253 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 TPM2P07951 284 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 KRT3P12035 628 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 NSFP46459 744 aaKnown RBP22.57■■□□□ 1.2
VTI1B-201ENST00000216456 CLCN6P51797 869 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 CCNHP51946 323 aaPredicted RBP22.57■■□□□ 1.2
VTI1B-201ENST00000216456 CAMK2BQ13554 666 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 FGL2Q14314 439 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 STX1AQ16623 288 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 SETMARQ53H47 684 aaPredicted RBP22.57■■□□□ 1.2
VTI1B-201ENST00000216456 C19orf48Q6RUI8 117 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 HORMAD1Q86X24 394 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 DNAAF5Q86Y56 855 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 CENPIQ92674 756 aaPredicted RBP22.57■■□□□ 1.2
VTI1B-201ENST00000216456 ARHGEF2Q92974 986 aaKnown RBP22.57■■□□□ 1.2
VTI1B-201ENST00000216456 CCDC114Q96M63 670 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 CCDC86Q9H6F5 360 aaKnown RBP22.57■■□□□ 1.2
VTI1B-201ENST00000216456 DMTF1Q9Y222 760 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 NBEAQ8NFP9 2946 aa22.57■■□□□ 1.2
VTI1B-201ENST00000216456 GOLGA4Q13439 2230 aaKnown RBP22.57■■□□□ 1.2
VTI1B-201ENST00000216456 TRABD2BA6NFA1 517 aa22.56■■□□□ 1.2
VTI1B-201ENST00000216456 PRAMEF26H0Y7S4 382 aa22.56■■□□□ 1.2
VTI1B-201ENST00000216456 PLEKP08567 350 aaPredicted RBP22.56■■□□□ 1.2
VTI1B-201ENST00000216456 THEGLP0DJG4 465 aa22.56■■□□□ 1.2
VTI1B-201ENST00000216456 HOXB3P14651 431 aaPredicted RBP22.56■■□□□ 1.2
VTI1B-201ENST00000216456 PTPN9P43378 593 aa22.56■■□□□ 1.2
VTI1B-201ENST00000216456 RECQLP46063 649 aaPredicted RBP22.56■■□□□ 1.2
VTI1B-201ENST00000216456 RXRGP48443 463 aa22.56■■□□□ 1.2
VTI1B-201ENST00000216456 ARRB1P49407 418 aaPredicted RBP22.56■■□□□ 1.2
VTI1B-201ENST00000216456 SMAD1Q15797 465 aaKnown RBP22.56■■□□□ 1.2
VTI1B-201ENST00000216456 CARD16Q5EG05 197 aa22.56■■□□□ 1.2
VTI1B-201ENST00000216456 SFMBT2Q5VUG0 894 aa22.56■■□□□ 1.2
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms