RNA–Protein interactions for RNA: ENST00000637551.2

CLN3-259, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,083 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-259ENST00000637551 MCF2LO15068 1137 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 EPN2O95208 641 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 ACADMP11310 421 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 SRCP12931 536 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 IL1R2P27930 398 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 SERPINB6P35237 376 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 CTSOP43234 321 aaPredicted RBP18.68■□□□□ 0.58
CLN3-259ENST00000637551 MAGEA1P43355 309 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 PXNP49023 591 aaPredicted RBP18.68■□□□□ 0.58
CLN3-259ENST00000637551 DPYSQ14117 519 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 TMCO4Q5TGY1 634 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 AFMIDQ63HM1 303 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 LPCAT2Q7L5N7 544 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 RABEPKQ7Z6M1 372 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 MAP7D3Q8IWC1 876 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 TSC1Q92574 1164 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 FOXJ1Q92949 421 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 FAM131CQ96AQ9 280 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 KCTD15Q96SI1 283 aaPredicted RBP18.68■□□□□ 0.58
CLN3-259ENST00000637551 BAG1Q99933 345 aaPredicted RBP18.68■□□□□ 0.58
CLN3-259ENST00000637551 ZNF670Q9BS34 389 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 STAU2Q9NUL3 570 aaKnown RBP eCLIP18.68■□□□□ 0.58
CLN3-259ENST00000637551 SLCO3A1Q9UIG8 710 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 CACNA1EQ15878 2313 aa18.68■□□□□ 0.58
CLN3-259ENST00000637551 RALGAPA1Q6GYQ0 2036 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 IGHV1OR15-9A0A0B4J2B8 117 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 SLC7A4O43246 635 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 KDELR3O43731 214 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 SIN3BO75182 1162 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 DNTTP04053 509 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 RARAP10276 462 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 HLA-EP13747 358 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 C5AR1P21730 350 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 TPMTP51580 245 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 CCDC15Q0P6D6 951 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 DLG2Q15700 870 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 FAM46CQ5VWP2 391 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 FAM160A2Q8N612 972 aaPredicted RBP18.67■□□□□ 0.58
CLN3-259ENST00000637551 CCDC112Q8NEF3 446 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 OR8D1Q8WZ84 308 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 LRIG1Q96JA1 1093 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 RPL10LQ96L21 214 aaKnown RBP18.67■□□□□ 0.58
CLN3-259ENST00000637551 TPSD1Q9BZJ3 242 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 NOL6Q9H6R4 1146 aaKnown RBP18.67■□□□□ 0.58
CLN3-259ENST00000637551 LRRC19Q9H756 370 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 SGK2Q9HBY8 427 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 PCDHA13Q9Y5I0 950 aa18.67■□□□□ 0.58
CLN3-259ENST00000637551 ARHGAP42A6NI28 874 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 TTC34A8MYJ7 566 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 CBX4O00257 560 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 CD6P30203 668 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 STK19P49842 368 aaPredicted RBP18.66■□□□□ 0.58
CLN3-259ENST00000637551 RPS14P62263 151 aaKnown RBP18.66■□□□□ 0.58
CLN3-259ENST00000637551 ARF5P84085 180 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 SERINC3Q13530 473 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 CA9Q16790 459 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 PPP6R3Q5H9R7 873 aaPredicted RBP18.66■□□□□ 0.58
CLN3-259ENST00000637551 PEAR1Q5VY43 1037 aaPredicted RBP18.66■□□□□ 0.58
CLN3-259ENST00000637551 IL31Q6EBC2 164 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 C22orf39Q6P5X5 142 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 KIAA1324Q6UXG2 1013 aaKnown RBP18.66■□□□□ 0.58
CLN3-259ENST00000637551 PRR23BQ6ZRT6 265 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 TMEM139Q8IV31 216 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 ATP11CQ8NB49 1132 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 TMIEQ8NEW7 156 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 OR7D4Q8NG98 312 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 PABPC3Q9H361 631 aaKnown RBP18.66■□□□□ 0.58
CLN3-259ENST00000637551 KDM4CQ9H3R0 1056 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 OSGEPQ9NPF4 335 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 NDFIP2Q9NV92 336 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 WSB2Q9NYS7 404 aaPredicted RBP18.66■□□□□ 0.58
CLN3-259ENST00000637551 CWC15Q9P013 229 aaKnown RBP18.66■□□□□ 0.58
CLN3-259ENST00000637551 DNAI1Q9UI46 699 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 SDK1Q7Z5N4 2213 aa18.66■□□□□ 0.58
CLN3-259ENST00000637551 RASA4BC9J798 803 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 C1QTNF3-AMACRE9PGA6 284 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 DAPK3O43293 454 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 RASA4O43374 803 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 SNAP91O60641 907 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 GSRP00390 522 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 PRNPP04156 253 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 GOT1P17174 413 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 ERCC2P18074 760 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 RECQLP46063 649 aaPredicted RBP18.65■□□□□ 0.58
CLN3-259ENST00000637551 ARSEP51690 589 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 RFTN1Q14699 578 aaPredicted RBP18.65■□□□□ 0.58
CLN3-259ENST00000637551 CST6Q15828 149 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 C11orf63Q6NUN7 778 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 FAF2Q96CS3 445 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 CSPG4P5Q96PW8 444 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 FAM129BQ96TA1 746 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 PCDH18Q9HCL0 1135 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 NCDNQ9UBB6 729 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 NCKAP1Q9Y2A7 1128 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 CHD8Q9HCK8 2581 aa18.65■□□□□ 0.58
CLN3-259ENST00000637551 PI4KAP42356 2102 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 BAHCC1Q9P281 2608 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 GON4LQ3T8J9 2241 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 DCLK1O15075 740 aa18.64■□□□□ 0.57
CLN3-259ENST00000637551 PJA2O43164 708 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms