RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 PRNPP04156 253 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 STAT4Q14765 748 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 DRAP1Q14919 205 aaPredicted RBP18.88■□□□□ 0.61
CLN3-241ENST00000635861 SFMBT2Q5VUG0 894 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 DPY19L2P1Q6NXN4 242 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 ERICH1Q86X53 443 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 ATP11CQ8NB49 1132 aa18.88■□□□□ 0.61
CLN3-241ENST00000635861 TRABD2BA6NFA1 517 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 CNTN5O94779 1100 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 METAP1P53582 386 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 RAPGEF1Q13905 1077 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 GSE1Q14687 1217 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 FAM102AQ5T9C2 384 aaPredicted RBP18.87■□□□□ 0.61
CLN3-241ENST00000635861 KLHDC7AQ5VTJ3 777 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 DHRS13Q6UX07 377 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 XYLT1Q86Y38 959 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 FAM174AQ8TBP5 190 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 HAPLN3Q96S86 360 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 PSMB7Q99436 277 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 NAA15Q9BXJ9 866 aaKnown RBP18.87■□□□□ 0.61
CLN3-241ENST00000635861 RETREG1Q9H6L5 497 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 PLCB1Q9NQ66 1216 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 VPS51Q9UID3 782 aa18.87■□□□□ 0.61
CLN3-241ENST00000635861 ILVBLA1L0T0 632 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 EEF1GP26641 437 aaKnown RBP18.86■□□□□ 0.61
CLN3-241ENST00000635861 CHRNA3P32297 505 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 GGCXP38435 758 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 ACADVLP49748 655 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 RNASE9P60153 205 aaKnown RBP18.86■□□□□ 0.61
CLN3-241ENST00000635861 SLC20A2Q08357 652 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 ALFQ53S48 1182 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 PRAMEF14Q5SWL7 426 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 BNIPLQ7Z465 357 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 ZNF677Q86XU0 584 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 OR2A12Q8NGT7 310 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 TSC1Q92574 1164 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 PPP1R16AQ96I34 528 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 TBCBQ99426 244 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 DYRK4Q9NR20 520 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 FHOD1Q9Y613 1164 aa18.86■□□□□ 0.61
CLN3-241ENST00000635861 PNMA6AP0CW24 399 aaPredicted RBP18.85■□□□□ 0.61
CLN3-241ENST00000635861 UCHL3P15374 230 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 OR1E1P30953 314 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 NUMBP49757 651 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 TAS2R38P59533 333 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 KCNMA1Q12791 1236 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 DPCR1Q3MIW9 517 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 PIP5KL1Q5T9C9 394 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 RETSATQ6NUM9 610 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 KANSL1Q7Z3B3 1105 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 ZSCAN30Q86W11 494 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 SPATS2Q86XZ4 545 aaKnown RBP18.85■□□□□ 0.61
CLN3-241ENST00000635861 CACTIN-AS1Q8N1I8 211 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 EID2Q8N6I1 236 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 TMEM145Q8NBT3 493 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 KLHDC7BQ96G42 594 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 HDAC8Q9BY41 377 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 STK33Q9BYT3 514 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 CEP44Q9C0F1 390 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 ANLNQ9NQW6 1124 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 DAAM1Q9Y4D1 1078 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 LOC400499M0QZD8 3231 aa18.85■□□□□ 0.61
CLN3-241ENST00000635861 I6L893 689 aaPredicted RBP18.84■□□□□ 0.61
CLN3-241ENST00000635861 PLK4O00444 970 aa18.84■□□□□ 0.61
CLN3-241ENST00000635861 MT-CO1P00395 513 aa18.84■□□□□ 0.61
CLN3-241ENST00000635861 CTSLP07711 333 aa18.84■□□□□ 0.61
CLN3-241ENST00000635861 TFE3P19532 575 aaPredicted RBP18.84■□□□□ 0.61
CLN3-241ENST00000635861 MAT2AP31153 395 aaKnown RBP18.84■□□□□ 0.61
CLN3-241ENST00000635861 RECQLP46063 649 aaPredicted RBP18.84■□□□□ 0.61
CLN3-241ENST00000635861 CCDC157Q569K6 752 aa18.84■□□□□ 0.61
CLN3-241ENST00000635861 C22orf39Q6P5X5 142 aa18.84■□□□□ 0.61
CLN3-241ENST00000635861 NXPE2Q96DL1 559 aa18.84■□□□□ 0.61
CLN3-241ENST00000635861 PPARGC1AQ9UBK2 798 aaKnown RBP18.84■□□□□ 0.61
CLN3-241ENST00000635861 TMEM59LQ9UK28 342 aa18.84■□□□□ 0.61
CLN3-241ENST00000635861 FASNP49327 2511 aaKnown RBP18.84■□□□□ 0.61
CLN3-241ENST00000635861 F8VZ95 297 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 KPNA3O00505 521 aaPredicted RBP18.83■□□□□ 0.61
CLN3-241ENST00000635861 BNIP3LO60238 219 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 SNAP91O60641 907 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 ENDOD1O94919 500 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 CKMT2P17540 419 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 FLT3P36888 993 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 ETFBP38117 255 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 NOMO3P69849 1222 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 CYP4F3Q08477 520 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 BNIP3Q12983 259 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 NFKBIBQ15653 356 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 ERN2Q76MJ5 926 aaKnown RBP18.83■□□□□ 0.61
CLN3-241ENST00000635861 HORMAD1Q86X24 394 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 EPS8L1Q8TE68 723 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 ZYG11BQ9C0D3 744 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 IL36AQ9UHA7 158 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 RAXQ9Y2V3 346 aa18.83■□□□□ 0.61
CLN3-241ENST00000635861 A0A087WV48 116 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 A0A0D9SEW6 157 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 PES1O00541 588 aaKnown RBP18.83■□□□□ 0.6
CLN3-241ENST00000635861 JUPP14923 745 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 HNRNPA2B1P22626 353 aaKnown RBP18.83■□□□□ 0.6
CLN3-241ENST00000635861 ACP1P24666 158 aa18.83■□□□□ 0.6
CLN3-241ENST00000635861 AKT2P31751 481 aa18.83■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms