RNA–Protein interactions for RNA: ENST00000631321.1

LINC00540-203, long intergenic non-protein coding RNA 540, humanhuman

TSL 2 BASIC

Gene LINC00540, Length 2,412 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-203ENST00000631321 ERFP50548 548 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 RABGGTBP53611 331 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 EPHB1P54762 984 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 TBL3Q12788 808 aaKnown RBP12.99□□□□□ -0.33
LINC00540-203ENST00000631321 CUL3Q13618 768 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 PRPSAP1Q14558 356 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 LIPMQ5VYY2 423 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 DCLRE1AQ6PJP8 1040 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 LINC00523Q86TU6 105 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 TLK2Q86UE8 772 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 CNTN4Q8IWV2 1026 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 IRGQQ8WZA9 623 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 ZFP42Q96MM3 310 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 OR52B2Q96RD2 323 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 KCNK16Q96T55 309 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 TCF7L2Q9NQB0 619 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 OR12D3Q9UGF7 316 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 CDH9Q9ULB4 789 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 LOC100653049A0A140TA62 436 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 E9PBE3 544 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 CASQ2O14958 399 aaPredicted RBP12.99□□□□□ -0.33
LINC00540-203ENST00000631321 HDAC3O15379 428 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 KLHL41O60662 606 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 KRT34O76011 436 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 LRIG2O94898 1065 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 JCHAINP01591 159 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 POLD2P49005 469 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 RPL26P61254 145 aaKnown RBP12.99□□□□□ -0.33
LINC00540-203ENST00000631321 COG7P83436 770 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 GRM3Q14832 879 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 TWF2Q6IBS0 349 aaKnown RBP12.99□□□□□ -0.33
LINC00540-203ENST00000631321 KBTBD6Q86V97 674 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 SCML4Q8N228 414 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 CPSF7Q8N684 471 aaKnown RBP12.99□□□□□ -0.33
LINC00540-203ENST00000631321 PHC3Q8NDX5 983 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 APOL2Q9BQE5 337 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 SHCBP1LQ9BZQ2 653 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 FAM192AQ9GZU8 254 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 TKTL2Q9H0I9 626 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 WDCPQ9H6R7 721 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 CSNK1G1Q9HCP0 422 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 MAN1C1Q9NR34 630 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 ADAMTS6Q9UKP5 1117 aa12.99□□□□□ -0.33
LINC00540-203ENST00000631321 TARM1B6A8C7 271 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 SORBS2O94875 1100 aaKnown RBP12.98□□□□□ -0.33
LINC00540-203ENST00000631321 THRAP10827 490 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 COL6A2P12110 1019 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 ASPHQ12797 758 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 ITGA7Q13683 1181 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 PRAMEF19Q5SWL8 479 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 OLFML2BQ68BL8 750 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 ACAD11Q709F0 780 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 CNTD1Q8N815 330 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 SLC26A7Q8TE54 656 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 STYXQ8WUJ0 223 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 LENG8Q96PV6 779 aaPredicted RBP12.98□□□□□ -0.33
LINC00540-203ENST00000631321 OSBPL2Q9H1P3 480 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 ZNF385DQ9H6B1 395 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 CYP4F11Q9HBI6 524 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 TLK1Q9UKI8 766 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 SLC39A10Q9ULF5 831 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 PRPF19Q9UMS4 504 aaKnown RBP12.98□□□□□ -0.33
LINC00540-203ENST00000631321 SSX2IPQ9Y2D8 614 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 SNX10Q9Y5X0 201 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 ZNF638Q14966 1978 aaKnown RBP12.98□□□□□ -0.33
LINC00540-203ENST00000631321 H3BNX3 289 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 PEX1O43933 1283 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 CHRNGP07510 517 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 TPH1P17752 444 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 MPSTP25325 297 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 PIK3R1P27986 724 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 ADSLP30566 484 aaPredicted RBP12.98□□□□□ -0.33
LINC00540-203ENST00000631321 RPL14P50914 215 aaKnown RBP12.98□□□□□ -0.33
LINC00540-203ENST00000631321 RNF220Q5VTB9 566 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 C9orf131Q5VYM1 1079 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 FOXB2Q5VYV0 432 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 PKN3Q6P5Z2 889 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 HPS6Q86YV9 775 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 CCDC117Q8IWD4 279 aaPredicted RBP12.98□□□□□ -0.33
LINC00540-203ENST00000631321 ZNF483Q8TF39 744 aaPredicted RBP12.98□□□□□ -0.33
LINC00540-203ENST00000631321 SMARCD1Q96GM5 515 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 TSC22D3Q99576 134 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 VTI1BQ9UEU0 232 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 VPS28Q9UK41 221 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 NEU3Q9UQ49 428 aa12.98□□□□□ -0.33
LINC00540-203ENST00000631321 C17orf102A2RUQ5 167 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 RGSL1A5PLK6 1076 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SLCO1B7G3V0H7 640 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 GRID2O43424 1007 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SMIM24O75264 130 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 ZNF865P0CJ78 1059 aaPredicted RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SLC35E2BP0CK96 405 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 GABRB3P28472 473 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 PEX19P40855 299 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 GRIA4P48058 902 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 PRKAA1Q13131 559 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 MSLNQ13421 630 aaPredicted RBP12.97□□□□□ -0.33
LINC00540-203ENST00000631321 PEX6Q13608 980 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 PCID2Q5JVF3 399 aa12.97□□□□□ -0.33
LINC00540-203ENST00000631321 SEL1L3Q68CR1 1132 aa12.97□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 60.5 ms