RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 ETNK2Q9NVF9 386 aa20.74■□□□□ 0.91
PTCD3-220ENST00000627371 DDX56Q9NY93 547 aaKnown RBP20.74■□□□□ 0.91
PTCD3-220ENST00000627371 CEP192Q8TEP8 1941 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 MACROD2A1Z1Q3 448 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 LRRD1A4D1F6 860 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 GRID2IPA4D2P6 1211 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 ZSCAN5CA6NGD5 496 aaPredicted RBP20.73■□□□□ 0.91
PTCD3-220ENST00000627371 ARHGAP42A6NI28 874 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 ZNF487B1APH4 448 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 KRT1P04264 644 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 CCDC175P0C221 793 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 TNNT1P13805 278 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 CNR2P34972 360 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 SERPINB6P35237 376 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 DLG2Q15700 870 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 ACCSLQ4AC99 568 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 ANKRD20A8PQ5CZ79 823 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 C9orf64Q5T6V5 341 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 TMPRSS6Q8IU80 811 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 LRRC57Q8N9N7 239 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 FAM86C1Q9NVL1 165 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 MFHAS1Q9Y4C4 1052 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 R4GN57 208 aa20.73■□□□□ 0.91
PTCD3-220ENST00000627371 C3orf70A6NLC5 250 aaPredicted RBP20.72■□□□□ 0.91
PTCD3-220ENST00000627371 K7ERQ8 282 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 SMAD6O43541 496 aaKnown RBP20.72■□□□□ 0.91
PTCD3-220ENST00000627371 CD160O95971 181 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 VAV1P15498 845 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 NBL1P41271 181 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 NHLH1Q02575 133 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 C22orf39Q6P5X5 142 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 PCDH19Q8TAB3 1148 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 KIAA1524Q8TCG1 905 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 CEP44Q9C0F1 390 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 SLC6A17Q9H1V8 727 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 PRDM16Q9HAZ2 1276 aa20.72■□□□□ 0.91
PTCD3-220ENST00000627371 KRT86O43790 486 aa20.71■□□□□ 0.91
PTCD3-220ENST00000627371 PTMAP06454 111 aaKnown RBP20.71■□□□□ 0.91
PTCD3-220ENST00000627371 PAPOLAP51003 745 aaKnown RBP20.71■□□□□ 0.91
PTCD3-220ENST00000627371 ELAVL3Q14576 367 aaKnown RBP20.71■□□□□ 0.91
PTCD3-220ENST00000627371 ODF2Q5BJF6 829 aa20.71■□□□□ 0.91
PTCD3-220ENST00000627371 KIAA1324Q6UXG2 1013 aaKnown RBP20.71■□□□□ 0.91
PTCD3-220ENST00000627371 ZNF662Q6ZS27 426 aa20.71■□□□□ 0.91
PTCD3-220ENST00000627371 Q6ZVU0 165 aa20.71■□□□□ 0.91
PTCD3-220ENST00000627371 RNF10Q8N5U6 811 aaKnown RBP20.71■□□□□ 0.91
PTCD3-220ENST00000627371 GAB3Q8WWW8 586 aa20.71■□□□□ 0.91
PTCD3-220ENST00000627371 PRCCQ92733 491 aaPredicted RBP20.71■□□□□ 0.91
PTCD3-220ENST00000627371 SIPA1Q96FS4 1042 aa20.71■□□□□ 0.91
PTCD3-220ENST00000627371 RSPH9Q9H1X1 276 aaPredicted RBP20.71■□□□□ 0.91
PTCD3-220ENST00000627371 SBDSQ9Y3A5 250 aaKnown RBP eCLIP20.71■□□□□ 0.91
PTCD3-220ENST00000627371 ACTL7AQ9Y615 435 aa20.71■□□□□ 0.91
PTCD3-220ENST00000627371 THADAQ6YHU6 1953 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 DFFAO00273 331 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 HRO43593 1189 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 RPP40O75818 363 aaKnown RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 CTNNA1P35221 906 aaKnown RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 SRSF5Q13243 272 aaKnown RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 PAFAH1B3Q15102 231 aaKnown RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 USP39Q53GS9 565 aaKnown RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 ZNF776Q68DI1 518 aaPredicted RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 NCBP2-AS2Q69YL0 99 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 METTL3Q86U44 580 aaKnown RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 KATNAL2Q8IYT4 538 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 ABCA7Q8IZY2 2146 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 SYCE1Q8N0S2 351 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 STK40Q8N2I9 435 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 PCDH20Q8N6Y1 951 aaKnown RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 PQLC3Q8N755 202 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 NETO2Q8NC67 525 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 CASKIN2Q8WXE0 1202 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 RNF157Q96PX1 679 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 PDFQ9HBH1 243 aa20.7■□□□□ 0.9
PTCD3-220ENST00000627371 FCF1Q9Y324 198 aaKnown RBP20.7■□□□□ 0.9
PTCD3-220ENST00000627371 ALOX15BO15296 676 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 MFSD11O43934 449 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 PRAMEF11O60813 436 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 RNASEH1O60930 286 aaKnown RBP20.69■□□□□ 0.9
PTCD3-220ENST00000627371 ZNF217O75362 1048 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 ZNF821O75541 412 aaPredicted RBP20.69■□□□□ 0.9
PTCD3-220ENST00000627371 PALMO75781 387 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 P2RY2P41231 377 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 MARCKSL1P49006 195 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 RPS14P62263 151 aaKnown RBP20.69■□□□□ 0.9
PTCD3-220ENST00000627371 ZBTB16Q05516 673 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 BYSLQ13895 437 aaKnown RBP20.69■□□□□ 0.9
PTCD3-220ENST00000627371 MAP7D1Q3KQU3 841 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 INO80DQ53TQ3 878 aaPredicted RBP20.69■□□□□ 0.9
PTCD3-220ENST00000627371 LEKR1Q6ZMV7 388 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 CACUL1Q86Y37 369 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 TP53INP2Q8IXH6 220 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 KRT35Q92764 455 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 ISG20Q96AZ6 181 aaKnown RBP20.69■□□□□ 0.9
PTCD3-220ENST00000627371 RNF25Q96BH1 459 aaPredicted RBP20.69■□□□□ 0.9
PTCD3-220ENST00000627371 SPACA7Q96KW9 195 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 CCDC114Q96M63 670 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 FAM129BQ96TA1 746 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 KCNF1Q9H3M0 494 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 USP36Q9P275 1121 aaKnown RBP20.69■□□□□ 0.9
PTCD3-220ENST00000627371 GUCA1BQ9UMX6 200 aa20.69■□□□□ 0.9
PTCD3-220ENST00000627371 CAPN6Q9Y6Q1 641 aa20.69■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms