RNA–Protein interactions for RNA: ENST00000625216.2

PNKP-217, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 629 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-217ENST00000625216 DNTTP04053 509 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 CFIP05156 583 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 SYPP08247 313 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 TCF4P15884 667 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 ENGP17813 658 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 CSRP1P21291 193 aaKnown RBP12.98□□□□□ -0.33
PNKP-217ENST00000625216 GPD1P21695 349 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 PSMA2P25787 234 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 CTNNA2P26232 953 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 CXCR5P32302 372 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 CXCR3P49682 368 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 ATXN3P54252 364 aaPredicted RBP12.98□□□□□ -0.33
PNKP-217ENST00000625216 TAS2R40P59535 323 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 RNASE9P60153 205 aaKnown RBP12.98□□□□□ -0.33
PNKP-217ENST00000625216 RPS14P62263 151 aaKnown RBP12.98□□□□□ -0.33
PNKP-217ENST00000625216 AUHQ13825 339 aaKnown RBP12.98□□□□□ -0.33
PNKP-217ENST00000625216 PLEKHG6Q3KR16 790 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 SLC25A52Q3SY17 297 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 RAB6CQ53S08 254 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 DCAF12L1Q5VU92 463 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 RNF219Q5W0B1 726 aaPredicted RBP12.98□□□□□ -0.33
PNKP-217ENST00000625216 ZNF776Q68DI1 518 aaPredicted RBP12.98□□□□□ -0.33
PNKP-217ENST00000625216 FBXL22Q6P050 247 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 RXFP2Q8WXD0 754 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 ALG3Q92685 438 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 MYO19Q96H55 970 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 MRGPRX3Q96LB0 322 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 RPRD1AQ96P16 312 aaPredicted RBP12.98□□□□□ -0.33
PNKP-217ENST00000625216 RAB6CQ9H0N0 254 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 CD93Q9NPY3 652 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 COX16Q9P0S2 106 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 CDC23Q9UJX2 597 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 ERVW-1Q9UQF0 538 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 SAR1BQ9Y6B6 198 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 THADAQ6YHU6 1953 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 SPTBN2O15020 2390 aa12.98□□□□□ -0.33
PNKP-217ENST00000625216 LAMA1P25391 3075 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 GON4LQ3T8J9 2241 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 MIF4GDA9UHW6 222 aaKnown RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 UPK3BL1B0FP48 263 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 UPK3BL2E5RIL1 263 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 ARHGAP33O14559 1287 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 PAGE1O75459 146 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 CLDN11O75508 207 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 KCNK5O95279 499 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 PRLRP16471 622 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 TCP1P17987 556 aaKnown RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 CTNNA1P35221 906 aaKnown RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 SLC1A1P43005 524 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 VASPP50552 380 aaPredicted RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 DEUP1Q05D60 604 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 ZNF177Q13360 481 aaPredicted RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 PIGHQ14442 188 aaPredicted RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 C15orf59Q2T9L4 293 aaPredicted RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 TTC31Q49AM3 519 aaPredicted RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 C5orf22Q49AR2 442 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 OTUD1Q5VV17 481 aaPredicted RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 ARFGAP1Q8N6T3 406 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 ZNF366Q8N895 744 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 LRRN4CLQ8ND94 238 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 C1orf74Q96LT6 269 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 CFAP57Q96MR6 1250 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 ADAM33Q9BZ11 813 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 ZDHHC5Q9C0B5 715 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 BTBD1Q9H0C5 482 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 RSPH9Q9H1X1 276 aaPredicted RBP12.97□□□□□ -0.33
PNKP-217ENST00000625216 SGK2Q9HBY8 427 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 PIGVQ9NUD9 493 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 ARHGEF38Q9NXL2 777 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 SMARCAL1Q9NZC9 954 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 LCMT1Q9UIC8 334 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 NCKAP1Q9Y2A7 1128 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 HS3ST4Q9Y661 456 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 PLXND1Q9Y4D7 1925 aa12.97□□□□□ -0.33
PNKP-217ENST00000625216 CNOT1A5YKK6 2376 aaKnown RBP12.96□□□□□ -0.33
PNKP-217ENST00000625216 ATXN2Q99700 1313 aaKnown RBP12.96□□□□□ -0.33
PNKP-217ENST00000625216 EDDM13A0A1B0GTR0 161 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 A0A1B0GTW7 788 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 MEI4A8MW99 385 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 KCNK3O14649 394 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 LRCH4O75427 683 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 CEACAM1P13688 526 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 TFE3P19532 575 aaPredicted RBP12.96□□□□□ -0.33
PNKP-217ENST00000625216 GJC1P36383 396 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 SULT1E1P49888 294 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 PEX5P50542 639 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 ZNF143P52747 638 aaPredicted RBP12.96□□□□□ -0.33
PNKP-217ENST00000625216 CDH4P55283 916 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 CCDC14Q49A88 953 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 SH3PXD2AQ5TCZ1 1133 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 LRRC31Q6UY01 552 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 USP30Q70CQ3 517 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 APCDD1Q8J025 514 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 HDDC3Q8N4P3 179 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 CAPZA3Q96KX2 299 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 CNPY3Q9BT09 278 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 CARD6Q9BX69 1037 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 TKTL2Q9H0I9 626 aa12.96□□□□□ -0.33
PNKP-217ENST00000625216 VANGL2Q9ULK5 521 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms