RNA–Protein interactions for RNA: ENST00000622702.1

PDLIM2-221, Transcript of PDZ and LIM domain 2, humanhuman

TSL 5 BASIC

Gene PDLIM2, Length 1,490 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-221ENST00000622702 TMEM215Q68D42 235 aa20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 MBLAC2Q68D91 279 aa20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 DRICH1Q6PGQ1 229 aaPredicted RBP20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 NUDT18Q6ZVK8 323 aa20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 CCDC33Q8N5R6 958 aa20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 PRELID2Q8N945 189 aa20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 FATE1Q969F0 183 aa20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 NKD2Q969F2 451 aaPredicted RBP20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 VPS51Q9UID3 782 aa20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 HCN4Q9Y3Q4 1203 aa20.25■□□□□ 0.83
PDLIM2-221ENST00000622702 ZSCAN5CA6NGD5 496 aaPredicted RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 PRRT4C9JH25 899 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 KRIT1O00522 736 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 TIMM44O43615 452 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 POLR2EP19388 210 aaKnown RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 CCNCP24863 283 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 NUBP1P53384 320 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 IL10RBQ08334 325 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 PRKD1Q15139 912 aaPredicted RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 CYP1B1Q16678 543 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 ARHGAP36Q6ZRI8 547 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 Q6ZS52 159 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 ZNF354CQ86Y25 554 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 C1orf54Q8WWF1 131 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 ATG4AQ8WYN0 398 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 EZH1Q92800 747 aaPredicted RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 QKIQ96PU8 341 aaKnown RBP eCLIP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 LGMNQ99538 433 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 FAM118BQ9BPY3 351 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 AP1M1Q9BXS5 423 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 CHRDQ9H2X0 955 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 PDFQ9HBH1 243 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 ELOVL2Q9NXB9 296 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 NYNRINQ9P2P1 1898 aaKnown RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 GOLGA6L10A0A0M3HER8 536 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 TBC1D3BA6NDS4 549 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 CBX4O00257 560 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 GALR2O43603 387 aaPredicted RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 LIASO43766 372 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 SNAP91O60641 907 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 ASLP04424 464 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 RBP3P10745 1247 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 COL9A1P20849 921 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 GLDCP23378 1020 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 ARF5P84085 180 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 SLC45A4Q5BKX6 768 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 DNTTIP2Q5QJE6 756 aaKnown RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 TIGD7Q6NT04 549 aaPredicted RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 RETSATQ6NUM9 610 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 ZNF572Q7Z3I7 529 aaPredicted RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 ZC3H18Q86VM9 953 aaKnown RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 SYNPOQ8N3V7 929 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 C12orf50Q8NA57 414 aaPredicted RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 CCNYQ8ND76 341 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 TFB1MQ8WVM0 346 aaKnown RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 SP110Q9HB58 689 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 SPATA6Q9NWH7 488 aaPredicted RBP20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 DNPEPQ9ULA0 475 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 STARD13Q9Y3M8 1113 aa20.24■□□□□ 0.83
PDLIM2-221ENST00000622702 H7C0C1 242 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 J3KR12 359 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 ZNF189O75820 626 aaPredicted RBP20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 ATP5BP06576 529 aaKnown RBP20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 TNFRSF4P43489 277 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 ATP5OP48047 213 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 VASPP50552 380 aaPredicted RBP20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 GEMIN4P57678 1058 aaKnown RBP20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 CKAP4Q07065 602 aaKnown RBP20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 SLC20A2Q08357 652 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 MTAPQ13126 283 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 BYSLQ13895 437 aaKnown RBP20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 GAS6Q14393 721 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 OASLQ15646 514 aaKnown RBP20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 CDKL3Q8IVW4 592 aaPredicted RBP20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 CCDC13Q8IYE1 715 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 ZNF599Q96NL3 588 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 CIPCQ9C0C6 399 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 RAPGEFL1Q9UHV5 662 aa20.23■□□□□ 0.83
PDLIM2-221ENST00000622702 BCLAF3A2AJT9 711 aaKnown RBP20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 K7EQS6 105 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 RNF40O75150 1001 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 PEX11BO96011 259 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 DLDP09622 509 aaKnown RBP20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 NUMBP49757 651 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 ECT2LQ008S8 904 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 FBXO43Q4G163 708 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 C1orf210Q8IVY1 113 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 SFTPA1Q8IWL2 248 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 MAML1Q92585 1016 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 PRRX2Q99811 253 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 HS3ST2Q9Y278 367 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 ATG2BQ96BY7 2078 aa20.22■□□□□ 0.83
PDLIM2-221ENST00000622702 CCDC188H7C350 402 aa20.21■□□□□ 0.83
PDLIM2-221ENST00000622702 MATN3O15232 486 aa20.21■□□□□ 0.83
PDLIM2-221ENST00000622702 MTSS1O43312 755 aa20.21■□□□□ 0.83
PDLIM2-221ENST00000622702 PHF2O75151 1096 aa20.21■□□□□ 0.83
PDLIM2-221ENST00000622702 CD160O95971 181 aa20.21■□□□□ 0.83
PDLIM2-221ENST00000622702 CTSOP43234 321 aaPredicted RBP20.21■□□□□ 0.83
PDLIM2-221ENST00000622702 AP1B1Q10567 949 aa20.21■□□□□ 0.83
PDLIM2-221ENST00000622702 RFTN1Q14699 578 aaPredicted RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms