RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 C1orf232A0A0U1RR37 186 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 ACSL4O60488 711 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 OR6A2O95222 327 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 FTH1P02794 183 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CCNB1P14635 433 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CTPS1P17812 591 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 KCNA3P22001 575 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 ZNF143P52747 638 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 DPYSL3Q14195 570 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 ZNHIT3Q15649 155 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 FAM228AQ86W67 206 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TMEM132CQ8N3T6 1108 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 DUSP9Q99956 384 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 PAPOLBQ9NRJ5 636 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TAGLN3Q9UI15 199 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CACNB4O00305 520 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 KPNA5O15131 536 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 VPS4BO75351 444 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 COX7A2P14406 83 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 NFKB1P19838 968 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 KCNMA1Q12791 1236 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 RRP1BQ14684 758 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 PAPD7Q5XG87 772 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 STARD8Q92502 1023 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 MRPL45Q9BRJ2 306 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 ADI1Q9BV57 179 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 DDX3XO00571 662 aaKnown RBP eCLIP11.54□□□□□ -0.565e-15■■■■□ 21
CLIP1-219ENST00000620786 ANXA5P08758 320 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 UQCRBP14927 111 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CXCR2P25025 360 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CLK3P49761 638 aaKnown RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 CASP5P51878 434 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 DUSP4Q13115 394 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 EFCAB3Q8N7B9 438 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 GPR20Q99678 358 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 KIAA1522Q9P206 1035 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-219ENST00000620786 VTI1BQ9UEU0 232 aa11.54□□□□□ -0.56
CLIP1-219ENST00000620786 TK2O00142 265 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 INHAP05111 366 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 PRKAA2P54646 552 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 SNAP47Q5SQN1 464 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 C9orf57Q5W0N0 161 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 FAM35AQ86V20 835 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 KATNAL2Q8IYT4 538 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 OR52K1Q8NGK4 314 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 LACRTQ9GZZ8 138 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 SEMA4BQ9NPR2 832 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 PECAM1P16284 738 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 DYNC1I2Q13409 638 aaKnown RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 TUSC3Q13454 348 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 NCF4Q15080 339 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ATAT1Q5SQI0 421 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 KDM7AQ6ZMT4 941 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 TMEM26Q6ZUK4 368 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 SLC41A1Q8IVJ1 513 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 HAS1Q92839 578 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ZBTB10Q96DT7 871 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 RAD21L1Q9H4I0 556 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 IL1RAPL1Q9NZN1 696 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 HAO1Q9UJM8 370 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 GRM6O15303 877 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 RARAP10276 462 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 MAMLD1Q13495 774 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 UBE2E3Q969T4 207 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 IL22Q9GZX6 179 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 RNPEPQ9H4A4 650 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 N6AMT1Q9Y5N5 214 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 A0A0B4J269 797 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 OR10H2O60403 315 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 SERPINE1P05121 402 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 UBTFL6P0CB48 400 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ACSM2AQ08AH3 577 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 GALNT3Q14435 633 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 STXBP5Q5T5C0 1151 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ACSM2BQ68CK6 577 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 CENPTQ96BT3 561 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 SNRNP25Q9BV90 132 aaKnown RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ASTN1O14525 1302 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ISM1B1AKI9 464 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 INPP4BO15327 924 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 MAGEC1O60732 1142 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 PLK1P53350 603 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 RGS1Q08116 209 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 RASA2Q15283 850 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 TAF13Q15543 124 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 FGD3Q5JSP0 725 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 PSRC1Q6PGN9 363 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 SLC24A5Q71RS6 500 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 FLCNQ8NFG4 579 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ARNTL2Q8WYA1 636 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 TCF7L2Q9NQB0 619 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 RPRD1BQ9NQG5 326 aaKnown RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ADPRHL2Q9NX46 363 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 ADAM28Q9UKQ2 775 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 AGO1Q9UL18 857 aaKnown RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 NAALADL1Q9UQQ1 740 aa11.53□□□□□ -0.56
CLIP1-219ENST00000620786 COL3A1P02461 1466 aaPredicted RBP11.53□□□□□ -0.56
CLIP1-219ENST00000620786 A0A1W2PQH9 124 aa11.52□□□□□ -0.56
CLIP1-219ENST00000620786 RIPK2O43353 540 aa11.52□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms