RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 UMODL1-AS1Q8N2C9 162 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 DEFB119Q8N690 84 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 TEKT4Q8WW24 435 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 CCDC114Q96M63 670 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 PANX2Q96RD6 677 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 GPR174Q9BXC1 333 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 NOL6Q9H6R4 1146 aaKnown RBP17.22■□□□□ 0.35
TRIM28-215ENST00000601150 ZWILCHQ9H900 591 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 VPS45Q9NRW7 570 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 NCKAP1Q9Y2A7 1128 aa17.22■□□□□ 0.35
TRIM28-215ENST00000601150 FARP1Q9Y4F1 1045 aaPredicted RBP17.22■□□□□ 0.35
TRIM28-215ENST00000601150 MID1O15344 667 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 KDELR3O43731 214 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 BNIP3LO60238 219 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 PROSCO94903 275 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 IL1BP01584 269 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 ZNF806P0C7X5 589 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 TCF4P15884 667 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 GOT1P17174 413 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 C5AR1P21730 350 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 SSR1P43307 286 aaKnown RBP17.21■□□□□ 0.35
TRIM28-215ENST00000601150 PSMD8P48556 350 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 HCAR3P49019 387 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 SLC25A11Q02978 314 aaKnown RBP17.21■□□□□ 0.35
TRIM28-215ENST00000601150 ZNF33AQ06730 810 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 CCDC6Q16204 474 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 DPYSL2Q16555 572 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 HADHQ16836 314 aaKnown RBP17.21■□□□□ 0.35
TRIM28-215ENST00000601150 SMTNL2Q2TAL5 461 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 PARP15Q460N3 678 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 KCNT1Q5JUK3 1230 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 C22orf39Q6P5X5 142 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 RFX8Q6ZV50 586 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 CADM4Q8NFZ8 388 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 GANCQ8TET4 914 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 HSPH1Q92598 858 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 PIGKQ92643 395 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 FOXJ1Q92949 421 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 ZNF419Q96HQ0 510 aaPredicted RBP17.21■□□□□ 0.35
TRIM28-215ENST00000601150 HSPA12BQ96MM6 686 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 CEP44Q9C0F1 390 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 STAU2Q9NUL3 570 aaKnown RBP eCLIP17.21■□□□□ 0.35
TRIM28-215ENST00000601150 FBXL12Q9NXK8 326 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 INTUQ9ULD6 942 aa17.21■□□□□ 0.35
TRIM28-215ENST00000601150 NUMA1Q14980 2115 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 ZSCAN5CA6NGD5 496 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-215ENST00000601150 RASA4BC9J798 803 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 H3BRJ5 948 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 MCF2LO15068 1137 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 RASA4O43374 803 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 RARAP10276 462 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 ARL4AP40617 200 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 RECQLP46063 649 aaPredicted RBP17.2■□□□□ 0.34
TRIM28-215ENST00000601150 NDST2P52849 883 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 LMNB2Q03252 620 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 SYCP2LQ5T4T6 812 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 FAM46CQ5VWP2 391 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 PRR23CQ6ZRP0 262 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 ZNF354CQ86Y25 554 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 SYT12Q8IV01 421 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 SLC41A1Q8IVJ1 513 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 RHOT2Q8IXI1 618 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 CCDC170Q8IYT3 715 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 OR2A12Q8NGT7 310 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 SLC35G2Q8TBE7 412 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 HMCESQ96FZ2 354 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 OMDQ99983 421 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 BTBD1Q9H0C5 482 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 PCED1AQ9H1Q7 454 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 SGK2Q9HBY8 427 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 OSGEPQ9NPF4 335 aa17.2■□□□□ 0.34
TRIM28-215ENST00000601150 CWC15Q9P013 229 aaKnown RBP17.2■□□□□ 0.34
TRIM28-215ENST00000601150 A0A1W2PP55 124 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 C1QTNF3-AMACRE9PGA6 284 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 ERCC2P18074 760 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 ITPKAP23677 461 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 CDC25BP30305 580 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 ACSL1P33121 698 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 MAN1A1P33908 653 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 HOXD12P35452 270 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 CYLC1P35663 651 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-215ENST00000601150 SERINC3Q13530 473 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 DPYSQ14117 519 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 TXNRD3NBQ6F5E7 133 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 HDDC3Q8N4P3 179 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 AADATQ8N5Z0 425 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 PCDH20Q8N6Y1 951 aaKnown RBP17.19■□□□□ 0.34
TRIM28-215ENST00000601150 C12orf50Q8NA57 414 aaPredicted RBP17.19■□□□□ 0.34
TRIM28-215ENST00000601150 RFFLQ8WZ73 363 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 ISG20Q96AZ6 181 aaKnown RBP17.19■□□□□ 0.34
TRIM28-215ENST00000601150 TNKS2Q9H2K2 1166 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 LRRC19Q9H756 370 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 PPM1HQ9ULR3 514 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 FZD4Q9ULV1 537 aa17.19■□□□□ 0.34
TRIM28-215ENST00000601150 FCF1Q9Y324 198 aaKnown RBP17.19■□□□□ 0.34
TRIM28-215ENST00000601150 PI4KAP42356 2102 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 TMEM110-MUSTN1A8MSY1 372 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 MEI4A8MW99 385 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 BUB1O43683 1085 aa17.18■□□□□ 0.34
TRIM28-215ENST00000601150 RNASEH2AO75792 299 aaKnown RBP17.18■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms