RNA–Protein interactions for RNA: ENST00000599575.5

SHKBP1-219, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 810 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-219ENST00000599575 MIA3Q5JRA6 1907 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 A0A1W2PQF6 199 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 ALOX15BO15296 676 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 PRAMEF11O60813 436 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 FTCDO95954 541 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 SRCP12931 536 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 TGM2P21980 687 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 CTSOP43234 321 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 PAPOLAP51003 745 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 ARF5P84085 180 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 ZBTB16Q05516 673 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 GALNT2Q10471 571 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 SFSWAPQ12872 951 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 ELAVL3Q14576 367 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 RPS6KA1Q15418 735 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 TIGD7Q6NT04 549 aaPredicted RBP16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 PKN3Q6P5Z2 889 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 DSG4Q86SJ6 1040 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 ZNF354CQ86Y25 554 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 CCDC50Q8IVM0 306 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 PCDH20Q8N6Y1 951 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 NPWQ8N729 165 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 RPL10LQ96L21 214 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 TSGA13Q96PP4 275 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 CARD9Q9H257 536 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 CD248Q9HCU0 757 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 ETNK2Q9NVF9 386 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 IPO11Q9UI26 975 aaKnown RBP16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 SLCO3A1Q9UIG8 710 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 JRKLQ9Y4A0 524 aa16.9■□□□□ 0.3
SHKBP1-219ENST00000599575 hCG_1818297A0A087WSY0 165 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 K7ESF4 209 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 SNAP91O60641 907 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 RNASEH1O60930 286 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 TJP3O95049 919 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 MARCKSL1P49006 195 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 SATB1Q01826 763 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 PDK1Q15118 436 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 DLG2Q15700 870 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 BBS12Q6ZW61 710 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 RASSF3Q86WH2 238 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 RFX6Q8HWS3 928 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 ATPAF2Q8N5M1 289 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 PLD5Q8N7P1 536 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 OR2T3Q8NH03 318 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 FRS2Q8WU20 508 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 NSMCE1Q8WV22 266 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 ALG3Q92685 438 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 CELF6Q96J87 481 aaKnown RBP16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 UBA2Q9UBT2 640 aaPredicted RBP16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 AMACRQ9UHK6 382 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 SCML1Q9UN30 329 aa16.89■□□□□ 0.29
SHKBP1-219ENST00000599575 WASH3PC4AMC7 463 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 DFFAO00273 331 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 DDX3YO15523 660 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 PRKCHP24723 683 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 CCNCP24863 283 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 CNR2P34972 360 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 HSPA9P38646 679 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 GARSP41250 739 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 RECQLP46063 649 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 STK19P49842 368 aaPredicted RBP16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 BYSLQ13895 437 aaKnown RBP16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 ANGPT1Q15389 498 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 ACCSLQ4AC99 568 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 TMEM92Q6UXU6 159 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 BBS5Q8N3I7 341 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 NELL1Q92832 810 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 HDAC11Q96DB2 347 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 LRIG1Q96JA1 1093 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 OSBPL8Q9BZF1 889 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 SP110Q9HB58 689 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 PDFQ9HBH1 243 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 DTLQ9NZJ0 730 aa16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP16.88■□□□□ 0.29
SHKBP1-219ENST00000599575 TTC34A8MYJ7 566 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 APOC4-APOC2K7ER74 178 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 PPP1R12AO14974 1030 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 MCF2LO15068 1137 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 MFSD11O43934 449 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 MAFKO60675 156 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 CST8O60676 142 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 CD160O95971 181 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 GSRP00390 522 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 MT-CO1P00395 513 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 APOC2P02655 101 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 PYGMP11217 842 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 TDGF1P13385 188 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 GLDCP23378 1020 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 RENBPP51606 427 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 NSUN2Q08J23 767 aaKnown RBP eCLIP16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 HNRNPDQ14103 355 aaKnown RBP16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 C9orf64Q5T6V5 341 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 C22orf39Q6P5X5 142 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 MAML2Q8IZL2 1156 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 TTC13Q8NBP0 860 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 P3H4Q92791 437 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 PTPRN2Q92932 1015 aa16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 RSPH9Q9H1X1 276 aaPredicted RBP16.87■□□□□ 0.29
SHKBP1-219ENST00000599575 PRSS16Q9NQE7 514 aa16.87■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 66.1 ms