RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 CEP44Q9C0F1 390 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 WSB2Q9NYS7 404 aaPredicted RBP15.35■□□□□ 0.05
UPF1-202ENST00000594243 PCDHGA5Q9Y5G8 931 aa15.35■□□□□ 0.05
UPF1-202ENST00000594243 PTPRZ1P23471 2315 aaPredicted RBP15.35■□□□□ 0.05
UPF1-202ENST00000594243 SPTBN4Q9H254 2564 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 FAM186AA6NE01 2351 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 SOWAHDA6NJG2 315 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 RASA4BC9J798 803 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 K7ERQ8 282 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 RASA4O43374 803 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 EPN2O95208 641 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 ADH1BP00325 375 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 IL1BP01584 269 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 VAV1P15498 845 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 C5AR1P21730 350 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 SLC8A1P32418 973 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 SLC1A1P43005 524 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 RECQLP46063 649 aaPredicted RBP15.34■□□□□ 0.05
UPF1-202ENST00000594243 NOP2P46087 812 aaKnown RBP15.34■□□□□ 0.05
UPF1-202ENST00000594243 DHPSP49366 369 aaPredicted RBP15.34■□□□□ 0.05
UPF1-202ENST00000594243 SERPINH1P50454 418 aaKnown RBP15.34■□□□□ 0.05
UPF1-202ENST00000594243 KRT81Q14533 505 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 CST6Q15828 149 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 FAM46CQ5VWP2 391 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 TXNRD3NBQ6F5E7 133 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 USP30Q70CQ3 517 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 POLNQ7Z5Q5 900 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 CACUL1Q86Y37 369 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 MAP7D3Q8IWC1 876 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 TMEFF1Q8IYR6 380 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 CASKIN2Q8WXE0 1202 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 TOE1Q96GM8 510 aaKnown RBP15.34■□□□□ 0.05
UPF1-202ENST00000594243 OMDQ99983 421 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 ARRDC1-AS1Q9H2J1 176 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 NOL6Q9H6R4 1146 aaKnown RBP15.34■□□□□ 0.05
UPF1-202ENST00000594243 RCOR3Q9P2K3 495 aaPredicted RBP15.34■□□□□ 0.05
UPF1-202ENST00000594243 DOCK4Q8N1I0 1966 aa15.34■□□□□ 0.05
UPF1-202ENST00000594243 MYO18AQ92614 2054 aaKnown RBP15.34■□□□□ 0.05
UPF1-202ENST00000594243 EML5Q05BV3 1969 aa15.33■□□□□ 0.05
UPF1-202ENST00000594243 ARHGAP42A6NI28 874 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 TMEM110-MUSTN1A8MSY1 372 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 C1QTNF3-AMACRE9PGA6 284 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 SMAD6O43541 496 aaKnown RBP15.33■□□□□ 0.04
UPF1-202ENST00000594243 BUB1O43683 1085 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 BNIP3LO60238 219 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 DPP6P42658 865 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 HADHBP55084 474 aaKnown RBP15.33■□□□□ 0.04
UPF1-202ENST00000594243 CDH6P55285 790 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 SERINC3Q13530 473 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 DPYSQ14117 519 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 PDK2Q15119 407 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 INO80DQ53TQ3 878 aaPredicted RBP15.33■□□□□ 0.04
UPF1-202ENST00000594243 C22orf39Q6P5X5 142 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 Q6ZVU0 165 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 DCLK2Q8N568 766 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 PCDH20Q8N6Y1 951 aaKnown RBP15.33■□□□□ 0.04
UPF1-202ENST00000594243 KCTD6Q8NC69 237 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 CADM4Q8NFZ8 388 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 OR2A12Q8NGT7 310 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 FAM71BQ8TC56 605 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 GANCQ8TET4 914 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 FOXJ1Q92949 421 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 ISG20Q96AZ6 181 aaKnown RBP15.33■□□□□ 0.04
UPF1-202ENST00000594243 HMCESQ96FZ2 354 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 ZNF419Q96HQ0 510 aaPredicted RBP15.33■□□□□ 0.04
UPF1-202ENST00000594243 CALR3Q96L12 384 aaKnown RBP15.33■□□□□ 0.04
UPF1-202ENST00000594243 CSPG4P5Q96PW8 444 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 SLC39A8Q9C0K1 460 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 BTBD1Q9H0C5 482 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 PABPC3Q9H361 631 aaKnown RBP15.33■□□□□ 0.04
UPF1-202ENST00000594243 LRRC19Q9H756 370 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 SGK2Q9HBY8 427 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 PCDH18Q9HCL0 1135 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 CD93Q9NPY3 652 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 FBXL12Q9NXK8 326 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 PPM1HQ9ULR3 514 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 CKAP5Q14008 2032 aa15.33■□□□□ 0.04
UPF1-202ENST00000594243 A0A0A6YYK5 440 aaPredicted RBP15.32■□□□□ 0.04
UPF1-202ENST00000594243 MID1O15344 667 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 FOXD2O60548 495 aaPredicted RBP15.32■□□□□ 0.04
UPF1-202ENST00000594243 CD160O95971 181 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 AMPD1P23109 780 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 CHRNA3P32297 505 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 PSMD8P48556 350 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 GSDMDP57764 484 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 TAS2R40P59535 323 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 CREB5Q02930 508 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 ZNF33AQ06730 810 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 SPEM2Q0P670 501 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 ATP13A4Q4VNC1 1196 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 CARD16Q5EG05 197 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 ZFYVE27Q5T4F4 411 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 SYCP2LQ5T4T6 812 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 LYSMD4Q5XG99 296 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 TMCO3Q6UWJ1 677 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 FAM124AQ86V42 546 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 PLPP6Q8IY26 295 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 TXLNBQ8N3L3 684 aa15.32■□□□□ 0.04
UPF1-202ENST00000594243 DEFB119Q8N690 84 aa15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms