RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 LRRC31Q6UY01 552 aa20.98■□□□□ 0.95
SHMT1-209ENST00000582653 GALNT15Q8N3T1 639 aa20.98■□□□□ 0.95
SHMT1-209ENST00000582653 MFSD2AQ8NA29 543 aa20.98■□□□□ 0.95
SHMT1-209ENST00000582653 PCMTD1Q96MG8 357 aaPredicted RBP20.98■□□□□ 0.95
SHMT1-209ENST00000582653 PCDHB18PQ96TA0 734 aa20.98■□□□□ 0.95
SHMT1-209ENST00000582653 CCDC86Q9H6F5 360 aaKnown RBP20.98■□□□□ 0.95
SHMT1-209ENST00000582653 GDF3Q9NR23 364 aa20.98■□□□□ 0.95
SHMT1-209ENST00000582653 ANO10Q9NW15 660 aa20.98■□□□□ 0.95
SHMT1-209ENST00000582653 LIMA1Q9UHB6 759 aaKnown RBP20.98■□□□□ 0.95
SHMT1-209ENST00000582653 PLXNA2O75051 1894 aa20.98■□□□□ 0.95
SHMT1-209ENST00000582653 NYNRINQ9P2P1 1898 aaKnown RBP20.98■□□□□ 0.95
SHMT1-209ENST00000582653 FREM2Q5SZK8 3169 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 IGLV3-10A0A075B6K4 115 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 PLRG1O43660 514 aaKnown RBP20.97■□□□□ 0.95
SHMT1-209ENST00000582653 GJB6O95452 261 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 MMP8P22894 467 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 NUDT1P36639 197 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 STAT1P42224 750 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 PPP2CBP62714 309 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 PPP2CAP67775 309 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 KRT83P78385 493 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 MYL5Q02045 173 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 SHBQ15464 509 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 STX1AQ16623 288 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 C15orf59Q2T9L4 293 aaPredicted RBP20.97■□□□□ 0.95
SHMT1-209ENST00000582653 LINGO4Q6UY18 593 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 ATP11CQ8NB49 1132 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 JOSD2Q8TAC2 188 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 SAP25Q8TEE9 199 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 C11orf70Q9BRQ4 267 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 ERVMER34-1Q9H9K5 563 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 VPS51Q9UID3 782 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 HS3ST2Q9Y278 367 aa20.97■□□□□ 0.95
SHMT1-209ENST00000582653 C1QTNF3-AMACRE9PGA6 284 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 YKT6O15498 198 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 SMAD6O43541 496 aaKnown RBP20.96■□□□□ 0.95
SHMT1-209ENST00000582653 ENDOD1O94919 500 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 ITGAVP06756 1048 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 GLDCP23378 1020 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 RRM1P23921 792 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 OR1E1P30953 314 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 CNTN1Q12860 1018 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 SMAD1Q15797 465 aaKnown RBP20.96■□□□□ 0.95
SHMT1-209ENST00000582653 CDO1Q16878 200 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 ARCQ7LC44 396 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 SETD3Q86TU7 594 aaPredicted RBP20.96■□□□□ 0.95
SHMT1-209ENST00000582653 GATAD2AQ86YP4 633 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 OR7D4Q8NG98 312 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 PIP4K2CQ8TBX8 421 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 RXFP2Q8WXD0 754 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 HAPLN3Q96S86 360 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 MAGEB5Q9BZ81 275 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 FTSJ1Q9UET6 329 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 DMTF1Q9Y222 760 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 PTPRBP23467 1997 aa20.96■□□□□ 0.95
SHMT1-209ENST00000582653 LGALS16A8MUM7 142 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 GOLGA6L22H0YM25 854 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 RNF103O00237 685 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 UNGP13051 313 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-209ENST00000582653 CDK11BP21127 795 aaKnown RBP20.95■□□□□ 0.94
SHMT1-209ENST00000582653 MAT2AP31153 395 aaKnown RBP20.95■□□□□ 0.94
SHMT1-209ENST00000582653 RXRGP48443 463 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 NXPH1P58417 271 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 UBXN1Q04323 297 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 PTP4A2Q12974 167 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 NCAPHQ15003 741 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 CCDC14Q49A88 953 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 NAPEPLDQ6IQ20 393 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 IQCHQ86VS3 1027 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 TRIM69Q86WT6 500 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 NEK11Q8NG66 645 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 SPON2Q9BUD6 331 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 C2orf49Q9BVC5 232 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-209ENST00000582653 HSD3B7Q9H2F3 369 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 DKK4Q9UBT3 224 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 ZNF212Q9UDV6 495 aa20.95■□□□□ 0.94
SHMT1-209ENST00000582653 FARP1Q9Y4F1 1045 aaPredicted RBP20.95■□□□□ 0.94
SHMT1-209ENST00000582653 MAGEC1O60732 1142 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 CTSLP07711 333 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 ARRB1P49407 418 aaPredicted RBP20.94■□□□□ 0.94
SHMT1-209ENST00000582653 OVGP1Q12889 678 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 STAT4Q14765 748 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 C6orf118Q5T5N4 469 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 AGBL4Q5VU57 503 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 APTXQ7Z2E3 356 aaKnown RBP20.94■□□□□ 0.94
SHMT1-209ENST00000582653 OXR1Q8N573 874 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 DCAF4L2Q8NA75 395 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 ANKRD20A12PQ8NF67 263 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 OR2A12Q8NGT7 310 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 ZYG11BQ9C0D3 744 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 TNKS2Q9H2K2 1166 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 PCDHGA1Q9Y5H4 931 aa20.94■□□□□ 0.94
SHMT1-209ENST00000582653 TRABD2BA6NFA1 517 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 LRRC10BA6NIK2 292 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 C2CD4BA6NLJ0 364 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 CBX4O00257 560 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 LDOC1O95751 146 aaPredicted RBP20.93■□□□□ 0.94
SHMT1-209ENST00000582653 C1SP09871 688 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 CDK4P11802 303 aa20.93■□□□□ 0.94
SHMT1-209ENST00000582653 CHRNA3P32297 505 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms