RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 KDM1BQ8NB78 822 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 C7orf57Q8NEG2 295 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 HDAC7Q8WUI4 952 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 MASTLQ96GX5 879 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 ZNF333Q96JL9 665 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 COG8Q96MW5 612 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 KRCC1Q9NPI7 259 aaPredicted RBP6.84□□□□□ -1.31
SS18-214ENST00000580003 ICKQ9UPZ9 632 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 OSGIN2Q9Y236 505 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 DNAJC16Q9Y2G8 782 aa6.84□□□□□ -1.31
SS18-214ENST00000580003 TTC3P53804 2025 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 KIF1CO43896 1103 aaKnown RBP6.83□□□□□ -1.32
SS18-214ENST00000580003 DDAH2O95865 285 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 HOXB2P14652 356 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 RASSF2P50749 326 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 CLCNKBP51801 687 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 ANKRD1Q15327 319 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 AP5B1Q2VPB7 878 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 FBXO47Q5MNV8 452 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 DENND1BQ6P3S1 775 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 WDR5BQ86VZ2 330 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 GABPB2Q8TAK5 448 aaPredicted RBP6.83□□□□□ -1.32
SS18-214ENST00000580003 ASB5Q8WWX0 329 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 ZSCAN31Q96LW9 406 aaPredicted RBP6.83□□□□□ -1.32
SS18-214ENST00000580003 PYM1Q9BRP8 204 aaKnown RBP6.83□□□□□ -1.32
SS18-214ENST00000580003 SF3B5Q9BWJ5 86 aaKnown RBP6.83□□□□□ -1.32
SS18-214ENST00000580003 CTDSP1Q9GZU7 261 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 MRPL44Q9H9J2 332 aaKnown RBP6.83□□□□□ -1.32
SS18-214ENST00000580003 PCDHGB3Q9Y5G1 929 aa6.83□□□□□ -1.32
SS18-214ENST00000580003 OR6C68A6NDL8 312 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 STMND1H3BQB6 276 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 TNFRSF13BO14836 293 aaPredicted RBP6.82□□□□□ -1.32
SS18-214ENST00000580003 RNMTO43148 476 aaKnown RBP6.82□□□□□ -1.32
SS18-214ENST00000580003 ANP32CO43423 234 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 HBP1O60381 514 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 CBX6O95503 412 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 CYP1A2P05177 515 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 UNGP13051 313 aaPredicted RBP6.82□□□□□ -1.32
SS18-214ENST00000580003 CPA1P15085 419 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 ENTPD1P49961 510 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 TMPRSS3P57727 454 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 PPFIA1Q13136 1202 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 IL13RA2Q14627 380 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 CTU1Q7Z7A3 348 aaKnown RBP6.82□□□□□ -1.32
SS18-214ENST00000580003 HERC6Q8IVU3 1022 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 SAMD14Q8IZD0 417 aaPredicted RBP6.82□□□□□ -1.32
SS18-214ENST00000580003 PELI3Q8N2H9 469 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 HORMAD2Q8N7B1 307 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 BICD2Q8TD16 824 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 WDR77Q9BQA1 342 aaPredicted RBP6.82□□□□□ -1.32
SS18-214ENST00000580003 NCKIPSDQ9NZQ3 722 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 CACNA1IQ9P0X4 2223 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 MST1RQ04912 1400 aa6.82□□□□□ -1.32
SS18-214ENST00000580003 C17orf102A2RUQ5 167 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 SPTLC2O15270 562 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 ALPLP05186 524 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 ARSBP15848 533 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 GJC1P36383 396 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 MTNR1AP48039 350 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 MAPK7Q13164 816 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 EFR3AQ14156 821 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 GPR18Q14330 331 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 SYTL3Q4VX76 610 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 KRTAP5-3Q6L8H2 238 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 HEPHL1Q6MZM0 1159 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 Q6ZTK2 550 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 ZDHHC17Q8IUH5 632 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 ANKRD18AQ8IVF6 992 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 USP38Q8NB14 1042 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 SCLT1Q96NL6 688 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 NPLQ9BXD5 320 aaPredicted RBP6.81□□□□□ -1.32
SS18-214ENST00000580003 KRTAP17-1Q9BYP8 105 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 TLR8Q9NR97 1041 aaKnown RBP6.81□□□□□ -1.32
SS18-214ENST00000580003 HIF1ANQ9NWT6 349 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 PLEKHB1Q9UF11 243 aaPredicted RBP6.81□□□□□ -1.32
SS18-214ENST00000580003 FBXO40Q9UH90 709 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 CD207Q9UJ71 328 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 GDAQ9Y2T3 454 aa6.81□□□□□ -1.32
SS18-214ENST00000580003 A0A0A0MQY5 61 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 FAM90A8PA6NJQ4 464 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 CNPP09543 421 aaKnown RBP6.8□□□□□ -1.32
SS18-214ENST00000580003 FAM90A13PP0C7W8 464 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 FAM90A24PP0C7X0 464 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 MYZAPP0CAP1 466 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 CHRNB2P17787 502 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 RFC1P35251 1148 aaPredicted RBP6.8□□□□□ -1.32
SS18-214ENST00000580003 AVPR1AP37288 418 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 SLC12A1Q13621 1099 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 ZNF517Q6ZMY9 492 aaPredicted RBP6.8□□□□□ -1.32
SS18-214ENST00000580003 ZDHHC23Q8IYP9 409 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 ENGASEQ8NFI3 743 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 RNFT2Q96EX2 444 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 CATSPERBQ9H7T0 1116 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 GRHL1Q9NZI5 618 aa6.8□□□□□ -1.32
SS18-214ENST00000580003 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.8□□□□□ -1.32
SS18-214ENST00000580003 TARSL2A2RTX5 802 aaKnown RBP6.79□□□□□ -1.32
SS18-214ENST00000580003 C17orf100A8MU93 164 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 KCNAB3O43448 404 aa6.79□□□□□ -1.32
SS18-214ENST00000580003 DHX16O60231 1041 aaKnown RBP6.79□□□□□ -1.32
SS18-214ENST00000580003 WEE2P0C1S8 567 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms