RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 LUC7L2Q9Y383 392 aaKnown RBP24.45■■□□□ 1.5
SHMT1-206ENST00000579558 MCF2LO15068 1137 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 ALOX15BO15296 676 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 BCAT2O15382 392 aaPredicted RBP24.44■■□□□ 1.5
SHMT1-206ENST00000579558 GYPCP04921 128 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 SERPING1P05155 500 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 ETFBP38117 255 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 FAM46CQ5VWP2 391 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 VPS36Q86VN1 386 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 BIRC7Q96CA5 298 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 CCDC114Q96M63 670 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 FARP1Q9Y4F1 1045 aaPredicted RBP24.44■■□□□ 1.5
SHMT1-206ENST00000579558 SCINQ9Y6U3 715 aa24.44■■□□□ 1.5
SHMT1-206ENST00000579558 TMEM191CA6NGB0 347 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 LRRC72A6NJI9 287 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 C1QTNF3-AMACRE9PGA6 284 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 SMAD6O43541 496 aaKnown RBP24.43■■□□□ 1.5
SHMT1-206ENST00000579558 ZMPSTE24O75844 475 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 MYBL1P10243 752 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 EPHB2P29323 1055 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 ACVRL1P37023 503 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 METAP1P53582 386 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 GALCP54803 685 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 KIAA0895LQ68EN5 471 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 C22orf39Q6P5X5 142 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 NCEH1Q6PIU2 408 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 PIP4K2CQ8TBX8 421 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 EPAS1Q99814 870 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 ISCUQ9H1K1 167 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 MYO1AQ9UBC5 1043 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 SARDHQ9UL12 918 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 PPM1HQ9ULR3 514 aa24.43■■□□□ 1.5
SHMT1-206ENST00000579558 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP24.43■■□□□ 1.5
SHMT1-206ENST00000579558 CBFA2T2O43439 604 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 CREB3O43889 395 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 DRD3P35462 400 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 SERPINH1P50454 418 aaKnown RBP24.42■■□□□ 1.5
SHMT1-206ENST00000579558 ARF5P84085 180 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 SLC20A2Q08357 652 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 MINDY1Q8N5J2 469 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 OR2T34Q8NGX1 318 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 OR14C36Q8NHC7 312 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 ARHGEF2Q92974 986 aaKnown RBP24.42■■□□□ 1.5
SHMT1-206ENST00000579558 ACE2Q9BYF1 805 aaPredicted RBP24.42■■□□□ 1.5
SHMT1-206ENST00000579558 TRIM7Q9C029 511 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 MAGEH1Q9H213 219 aa24.42■■□□□ 1.5
SHMT1-206ENST00000579558 RAMP2O60895 175 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 CASP14P31944 242 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 RECQLP46063 649 aaPredicted RBP24.41■■□□□ 1.5
SHMT1-206ENST00000579558 ADPRHP54922 357 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 ZNF252P-AS1Q0IIN9 211 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 GRIK2Q13002 908 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 POM121L1PQ3SYA9 428 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP24.41■■□□□ 1.5
SHMT1-206ENST00000579558 RTL3Q8N8U3 475 aaKnown RBP24.41■■□□□ 1.5
SHMT1-206ENST00000579558 RNF214Q8ND24 703 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 OR2A12Q8NGT7 310 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 OR2I1PQ8NGU4 316 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 C1orf216Q8TAB5 229 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 FNIP1Q8TF40 1166 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 TNKS2Q9H2K2 1166 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 MRPL47Q9HD33 250 aaKnown RBP24.41■■□□□ 1.5
SHMT1-206ENST00000579558 GPATCH2LQ9NWQ4 482 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 SLCO1B1Q9Y6L6 691 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 NCOR2Q9Y618 2525 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 CHD5Q8TDI0 1954 aa24.41■■□□□ 1.5
SHMT1-206ENST00000579558 CACNA1EQ15878 2313 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 PLK4O00444 970 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 OPHN1O60890 802 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 RNF8O76064 485 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 IGHV4-34P06331 123 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 CD27P26842 260 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 CHRNA3P32297 505 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 POLD3Q15054 466 aaPredicted RBP24.4■■□□□ 1.5
SHMT1-206ENST00000579558 NFKBIBQ15653 356 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 ZDHHC5Q9C0B5 715 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 CEP44Q9C0F1 390 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 CATSPERBQ9H7T0 1116 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 PCSK1NQ9UHG2 260 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 HPCAL4Q9UM19 191 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 AP4E1Q9UPM8 1137 aa24.4■■□□□ 1.5
SHMT1-206ENST00000579558 CTSLP07711 333 aa24.39■■□□□ 1.49
SHMT1-206ENST00000579558 AFF3P51826 1226 aaKnown RBP24.39■■□□□ 1.49
SHMT1-206ENST00000579558 SEMA3BQ13214 749 aa24.39■■□□□ 1.49
SHMT1-206ENST00000579558 ARFGAP1Q8N6T3 406 aa24.39■■□□□ 1.49
SHMT1-206ENST00000579558 PCDH20Q8N6Y1 951 aaKnown RBP24.39■■□□□ 1.49
SHMT1-206ENST00000579558 CHST14Q8NCH0 376 aa24.39■■□□□ 1.49
SHMT1-206ENST00000579558 TM9SF3Q9HD45 589 aa24.39■■□□□ 1.49
SHMT1-206ENST00000579558 FCF1Q9Y324 198 aaKnown RBP24.39■■□□□ 1.49
SHMT1-206ENST00000579558 ACTL7AQ9Y615 435 aa24.39■■□□□ 1.49
SHMT1-206ENST00000579558 ASCC3Q8N3C0 2202 aaKnown RBP24.38■■□□□ 1.49
SHMT1-206ENST00000579558 A0A087X0T9 212 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 SLC7A4O43246 635 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 KCNK5O95279 499 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 PRNPP04156 253 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 FAM228BP0C875 321 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 NOVA1P51513 510 aaKnown RBP24.38■■□□□ 1.49
SHMT1-206ENST00000579558 DNA2P51530 1060 aa24.38■■□□□ 1.49
SHMT1-206ENST00000579558 GEMIN4P57678 1058 aaKnown RBP24.38■■□□□ 1.49
SHMT1-206ENST00000579558 TPI1P60174 286 aa24.38■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms