RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 ACTN1P12814 892 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 HDCP19113 662 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 CFPP27918 469 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 CSF2RBP32927 897 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 CIITAP33076 1130 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 RFC2P35250 354 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 TCF7P36402 384 aaPredicted RBP6.43□□□□□ -1.38
VPS53-212ENST00000572259 SLC26A2P50443 739 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 RBP5P82980 135 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 SP4Q02446 784 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 CD69Q07108 199 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 AP1B1Q10567 949 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 BFSP1Q12934 665 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 CHAF1BQ13112 559 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 SLC12A1Q13621 1099 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 NONOQ15233 471 aaKnown RBP eCLIP6.43□□□□□ -1.38
VPS53-212ENST00000572259 UTP14CQ5TAP6 766 aaKnown RBP6.43□□□□□ -1.38
VPS53-212ENST00000572259 SNX30Q5VWJ9 437 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 FAM160B1Q5W0V3 765 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 PSRC1Q6PGN9 363 aaPredicted RBP6.43□□□□□ -1.38
VPS53-212ENST00000572259 BORAQ6PGQ7 559 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 C11orf88Q6PI97 169 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 IL27RAQ6UWB1 636 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 BBS12Q6ZW61 710 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 RSPH3Q86UC2 560 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 SLC9B2Q86UD5 537 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 NECAB1Q8N987 351 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 TAF4BQ92750 862 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 PGBD1Q96JS3 809 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 FAM167AQ96KS9 214 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 GPR20Q99678 358 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 FDXACB1Q9BRP7 624 aaPredicted RBP6.43□□□□□ -1.38
VPS53-212ENST00000572259 ZNF577Q9BSK1 485 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 HGH1Q9BTY7 390 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 TRPV6Q9H1D0 765 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 PRDM13Q9H4Q3 707 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 SEPSECSQ9HD40 501 aaKnown RBP6.43□□□□□ -1.38
VPS53-212ENST00000572259 HDAC6Q9UBN7 1215 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 TBX20Q9UMR3 447 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 GRIN2DO15399 1336 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 NRCAMQ92823 1304 aa6.43□□□□□ -1.38
VPS53-212ENST00000572259 LRRC14BA6NHZ5 514 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 NT5C1B-RDH14C9J2C7 533 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 HAS3O00219 553 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 ATP9AO75110 1047 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 BAG4O95429 457 aaKnown RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 MLYCDO95822 493 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 FGBP02675 491 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 HNRNPA1P09651 372 aaKnown RBP eCLIP6.42□□□□□ -1.38
VPS53-212ENST00000572259 ZNF286BP0CG31 522 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 ARP10275 920 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 CYP2C9P11712 490 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 RPS2P15880 293 aaKnown RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 GCFC2P16383 781 aaKnown RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 CYP2C18P33260 490 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 KRT2P35908 639 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 NNMTP40261 264 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 LIMK1P53667 647 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 HTRA4P83105 476 aaPredicted RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 CREB5Q02930 508 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 PPARDQ03181 441 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 ADRM1Q16186 407 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 LRIT3Q3SXY7 679 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 CTXN3Q4LDR2 81 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 NT5DC1Q5TFE4 455 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 MIS18BP1Q6P0N0 1132 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 ALKBH5Q6P6C2 394 aaKnown RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 MOXD1Q6UVY6 613 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 USP30Q70CQ3 517 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 PLPPR4Q7Z2D5 763 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 GALNT7Q86SF2 657 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 TTC7BQ86TV6 843 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 CCDC83Q8IWF9 413 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 KBTBD2Q8IY47 623 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 LRRC71Q8N4P6 559 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 GLB1L3Q8NCI6 653 aaPredicted RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 TET1Q8NFU7 2136 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 PPP1R14CQ8TAE6 165 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 TBCKQ8TEA7 893 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 STYXQ8WUJ0 223 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 KAT2BQ92831 832 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 ATP6V0A1Q93050 837 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 LPPQ93052 612 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 NKD2Q969F2 451 aaPredicted RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 RIT2Q99578 217 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 C16orf70Q9BSU1 422 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 OR10A2Q9H208 303 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 PRO3102Q9H379 93 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 RABEP2Q9H5N1 569 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 IL23AQ9NPF7 189 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 NECTIN3Q9NQS3 549 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 EIF2B3Q9NR50 452 aaKnown RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 CPSF2Q9P2I0 782 aaKnown RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 AFF4Q9UHB7 1163 aaKnown RBP6.42□□□□□ -1.38
VPS53-212ENST00000572259 KCNJ14Q9UNX9 436 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 MAN2B2Q9Y2E5 1009 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 PCDHA10Q9Y5I2 948 aa6.42□□□□□ -1.38
VPS53-212ENST00000572259 SYNJ2BP-COX16A0A087WUM0 186 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 CYP3A7-CYP3A51PA0A087WV96 503 aa6.41□□□□□ -1.38
VPS53-212ENST00000572259 HSFX4A0A1B0GTS1 333 aaPredicted RBP6.41□□□□□ -1.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms