RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 ELF2Q15723 593 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 TRIM71Q2Q1W2 868 aaKnown RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 EARS2Q5JPH6 523 aaKnown RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 ATF7IPQ6VMQ6 1270 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 KYAT3Q6YP21 454 aaKnown RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 LDHAL6AQ6ZMR3 332 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 MRPL10Q7Z7H8 261 aaKnown RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 TTC30AQ86WT1 665 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 FTSJ3Q8IY81 847 aaKnown RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 LAS2Q8IYD9 372 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 GOLGA6L2Q8N9W4 650 aaPredicted RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 WIPF2Q8TF74 440 aaPredicted RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 ASB12Q8WXK4 309 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 PMM1Q92871 262 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 FCRL4Q96PJ5 515 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 ELAC2Q9BQ52 826 aaKnown RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 USP44Q9H0E7 712 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 CHMP4BQ9H444 224 aaKnown RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 MLXIPLQ9NP71 852 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 NLRC4Q9NPP4 1024 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 FSCN3Q9NQT6 498 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 MTMR4Q9NYA4 1195 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 POLLQ9UGP5 575 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 HACL1Q9UJ83 578 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 SLC39A10Q9ULF5 831 aa4.55□□□□□ -1.68
NUP88-202ENST00000570937 UBE2J1Q9Y385 318 aaPredicted RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 HEMK1Q9Y5R4 338 aaPredicted RBP4.55□□□□□ -1.68
NUP88-202ENST00000570937 ZMYM2Q9UBW7 1377 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 MROH5Q6ZUA9 1318 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 PNMA6EA0A0J9YXQ4 647 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 PCDH17O14917 1159 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 ECE2O60344 883 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 TAF5LO75529 589 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 DDNO94850 711 aaPredicted RBP4.54□□□□□ -1.68
NUP88-202ENST00000570937 SGPL1O95470 568 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 SLC3A2P08195 630 aaKnown RBP4.54□□□□□ -1.68
NUP88-202ENST00000570937 ITGA5P08648 1049 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 CD63P08962 238 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 ALADP13716 330 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 RPS6KB1P23443 525 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 RPS12P25398 132 aaKnown RBP4.54□□□□□ -1.68
NUP88-202ENST00000570937 PRELPP51888 382 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 ZNF91Q05481 1191 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 CXCL9Q07325 125 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 RABEP1Q15276 862 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 SLC9C1Q4G0N8 1177 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 GLE1Q53GS7 698 aaKnown RBP4.54□□□□□ -1.68
NUP88-202ENST00000570937 SHC4Q6S5L8 630 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 RBM44Q6ZP01 1051 aaKnown RBP4.54□□□□□ -1.68
NUP88-202ENST00000570937 USP50Q70EL3 339 aaPredicted RBP4.54□□□□□ -1.68
NUP88-202ENST00000570937 PIP4P1Q86T03 277 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 RFX6Q8HWS3 928 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 NANOGP1Q8N7R0 232 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 C18orf8Q96DM3 657 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 TMEM41AQ96HV5 264 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 EIF3CQ99613 913 aaKnown RBP4.54□□□□□ -1.68
NUP88-202ENST00000570937 ASNSD1Q9NWL6 643 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 AFG3L2Q9Y4W6 797 aa4.54□□□□□ -1.68
NUP88-202ENST00000570937 TNRC6CQ9HCJ0 1690 aaKnown RBP4.54□□□□□ -1.68
NUP88-202ENST00000570937 MYO3BQ8WXR4 1341 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 ZNF541Q9H0D2 1346 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 LY6G6EA0A0G2JKS1 128 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 C2CD4BA6NLJ0 364 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 SOCS2O14508 198 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 ADAM10O14672 748 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 PLIN1O60240 522 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 ANXA6P08133 673 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 HMGB1P09429 215 aaKnown RBP4.53□□□□□ -1.68
NUP88-202ENST00000570937 NPPBP16860 134 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 HOXA7P31268 230 aaPredicted RBP4.53□□□□□ -1.68
NUP88-202ENST00000570937 EPHX2P34913 555 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 SOX2P48431 317 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 VPS41P49754 854 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 AGTR2P50052 363 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 PLCD1P51178 756 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 SLC12A2P55011 1212 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 CHRNDQ07001 517 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 DMWDQ09019 674 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 STIM1Q13586 685 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 UBE4AQ14139 1066 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 RBMS2Q15434 407 aaKnown RBP4.53□□□□□ -1.68
NUP88-202ENST00000570937 RABL6Q3YEC7 729 aaPredicted RBP4.53□□□□□ -1.68
NUP88-202ENST00000570937 CAVIN4Q5BKX8 364 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 C16orf89Q6UX73 402 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 SYTL1Q8IYJ3 562 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 AGBL3Q8NEM8 1001 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 NPIPB3Q92617 1050 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 TTLL2Q9BWV7 592 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 COA1Q9GZY4 146 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 TAF1DQ9H5J8 278 aaPredicted RBP4.53□□□□□ -1.68
NUP88-202ENST00000570937 BICC1Q9H694 974 aaKnown RBP4.53□□□□□ -1.68
NUP88-202ENST00000570937 DBNDD1Q9H9R9 158 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 CHST12Q9NRB3 414 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 TMEM184CQ9NVA4 438 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 FBXO28Q9NVF7 368 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 IGSF9Q9P2J2 1179 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 FER1L6Q2WGJ9 1857 aa4.53□□□□□ -1.68
NUP88-202ENST00000570937 MED23Q9ULK4 1368 aa4.53□□□□□ -1.69
NUP88-202ENST00000570937 DDX60Q8IY21 1712 aaKnown RBP4.52□□□□□ -1.69
NUP88-202ENST00000570937 SBF1O95248 1867 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms