RNA–Protein interactions for RNA: ENST00000570510.6

VPS53-207, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-207ENST00000570510 DCAF6Q58WW2 860 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 MS4A13Q5J8X5 152 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 PERM1Q5SV97 790 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 ARHGAP17Q68EM7 881 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 SHC4Q6S5L8 630 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 ATCAYQ86WG3 371 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 SLC22A18ASQ8N1D0 253 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 TAS1R2Q8TE23 839 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 TMEM174Q8WUU8 243 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 BTN2A2Q8WVV5 523 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 TATDN2Q93075 761 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 NOX5Q96PH1 765 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 GTPBP4Q9BZE4 634 aaKnown RBP11.38□□□□□ -0.59
VPS53-207ENST00000570510 NUCKS1Q9H1E3 243 aaKnown RBP11.38□□□□□ -0.59
VPS53-207ENST00000570510 APOBEC3GQ9HC16 384 aaKnown RBP11.38□□□□□ -0.59
VPS53-207ENST00000570510 CNGB3Q9NQW8 809 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 CISHQ9NSE2 258 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 SPASTQ9UBP0 616 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 TSPAN16Q9UKR8 245 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 PADI4Q9UM07 663 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 ZDHHC9Q9Y397 364 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 HS3ST3A1Q9Y663 406 aa11.38□□□□□ -0.59
VPS53-207ENST00000570510 TDRD6O60522 2096 aaKnown RBP11.37□□□□□ -0.59
VPS53-207ENST00000570510 SPTY2D1-AS1A0A0U1RR47 76 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 AGRPO00253 132 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 TULP2O00295 520 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 ALOX15BO15296 676 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 NVLO15381 856 aaKnown RBP11.37□□□□□ -0.59
VPS53-207ENST00000570510 APOEP02649 317 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 NR3C1P04150 777 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 HGFP14210 728 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 RABIFP47224 123 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 OXCT1P55809 520 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 KCNAB2Q13303 367 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 SGCGQ13326 291 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 PKP1Q13835 747 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 PDE1CQ14123 709 aaPredicted RBP11.37□□□□□ -0.59
VPS53-207ENST00000570510 FZD2Q14332 565 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 DLG2Q15700 870 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 ZNF284Q2VY69 593 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 PRRT3Q5FWE3 981 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 TMEM164Q5U3C3 297 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 NADSYN1Q6IA69 706 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 MSANTD2Q6P1R3 559 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 GCNT7Q6ZNI0 430 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 Q6ZVU0 165 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 ABI3BPQ7Z7G0 1075 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 CHSY1Q86X52 802 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 CEP57L1Q8IYX8 460 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 SLC4A11Q8NBS3 891 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 UBA3Q8TBC4 463 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 SCG3Q8WXD2 468 aaKnown RBP11.37□□□□□ -0.59
VPS53-207ENST00000570510 ERCC4Q92889 916 aaPredicted RBP11.37□□□□□ -0.59
VPS53-207ENST00000570510 FAM131CQ96AQ9 280 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 PPP1R13BQ96KQ4 1090 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 TMEM74Q96NL1 305 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 SERPINB11Q96P15 392 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 FOXP3Q9BZS1 431 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 SLC13A1Q9BZW2 595 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 BLZF1Q9H2G9 400 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 CAAP1Q9H8G2 361 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 GULP1Q9UBP9 304 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 ACSL6Q9UKU0 697 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 SRPK3Q9UPE1 567 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 HPSEQ9Y251 543 aa11.37□□□□□ -0.59
VPS53-207ENST00000570510 TLN1Q9Y490 2541 aaKnown RBP11.37□□□□□ -0.59
VPS53-207ENST00000570510 F5H5T6 163 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 FPGTO14772 594 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 IGLV3-27P01718 113 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 LTFP02788 710 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 CCR10P46092 362 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 THOP1P52888 689 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 RAD23BP54727 409 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 ADKP55263 362 aaKnown RBP11.36□□□□□ -0.59
VPS53-207ENST00000570510 POLE2P56282 527 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 DAOAP59103 153 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 TAS2R38P59533 333 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 RAP1GAP2Q684P5 730 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 BHLHA9Q7RTU4 235 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 SLC9A9Q8IVB4 645 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 ELOA2Q8IYF1 753 aaPredicted RBP11.36□□□□□ -0.59
VPS53-207ENST00000570510 FRS2Q8WU20 508 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 KCTD13Q8WZ19 329 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 PPP1R16AQ96I34 528 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 FEM1CQ96JP0 617 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 SLC17A9Q9BYT1 436 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 DMAC2Q9NW81 257 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 PLEKHB1Q9UF11 243 aaPredicted RBP11.36□□□□□ -0.59
VPS53-207ENST00000570510 APOBEC3BQ9UH17 382 aaKnown RBP11.36□□□□□ -0.59
VPS53-207ENST00000570510 SLC12A6Q9UHW9 1150 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 TLR6Q9Y2C9 796 aa11.36□□□□□ -0.59
VPS53-207ENST00000570510 PRAMEF33A0A0G2JMD5 474 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 POM121BA6NF01 834 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 M0QYT0 321 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 PIK3R2O00459 728 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 POLR2DO15514 142 aaKnown RBP11.35□□□□□ -0.59
VPS53-207ENST00000570510 CALUO43852 315 aaPredicted RBP11.35□□□□□ -0.59
VPS53-207ENST00000570510 PRAMEF10O60809 474 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 AGFG2O95081 481 aa11.35□□□□□ -0.59
VPS53-207ENST00000570510 PAK4O96013 591 aaPredicted RBP11.35□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms