RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 ESRP1Q6NXG1 681 aaKnown RBP18.56■□□□□ 0.56
CLK3-227ENST00000570296 CFAP52Q8N1V2 620 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 GOLGA5Q8TBA6 731 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 CLIC6Q96NY7 704 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 PANK2Q9BZ23 570 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 B3GNT4Q9C0J1 378 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 FOXJ2Q9P0K8 574 aa18.56■□□□□ 0.56
CLK3-227ENST00000570296 IPO11Q9UI26 975 aaKnown RBP18.56■□□□□ 0.56
CLK3-227ENST00000570296 ZFR2Q9UPR6 939 aaKnown RBP18.56■□□□□ 0.56
CLK3-227ENST00000570296 SDK2Q58EX2 2172 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 POM121BA6NF01 834 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 LMO7DNF2Z398 122 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 XPO1O14980 1071 aaKnown RBP18.55■□□□□ 0.56
CLK3-227ENST00000570296 ATP9BO43861 1147 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 EIF5BO60841 1220 aaKnown RBP18.55■□□□□ 0.56
CLK3-227ENST00000570296 PRR29P0C7W0 189 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 POU3F2P20265 443 aaPredicted RBP18.55■□□□□ 0.56
CLK3-227ENST00000570296 ELAVL4P26378 380 aaKnown RBP18.55■□□□□ 0.56
CLK3-227ENST00000570296 OXCT1P55809 520 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 ADIGQ0VDE8 80 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 ZNF394Q53GI3 561 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 TICAM1Q8IUC6 712 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 SCML4Q8N228 414 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 TTC39CQ8N584 583 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 TMC2Q8TDI7 906 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 ERCC4Q92889 916 aaPredicted RBP18.55■□□□□ 0.56
CLK3-227ENST00000570296 TBATAQ96M53 351 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 CATSPER2Q96P56 530 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 NUCKS1Q9H1E3 243 aaKnown RBP18.55■□□□□ 0.56
CLK3-227ENST00000570296 OTOGQ6ZRI0 2925 aa18.55■□□□□ 0.56
CLK3-227ENST00000570296 PCDH8O95206 1070 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 NOS2P35228 1153 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 PLK1P53350 603 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 FHL5Q5TD97 284 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 SEL1L3Q68CR1 1132 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 CNNM4Q6P4Q7 775 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 SIX6OS1Q8N1H7 587 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 SSC4DQ8WTU2 575 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 PPP1R13BQ96KQ4 1090 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 PHF12Q96QT6 1004 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 CNGB3Q9NQW8 809 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 ZNF71Q9NQZ8 489 aaPredicted RBP18.54■□□□□ 0.56
CLK3-227ENST00000570296 KBTBD4Q9NVX7 518 aa18.54■□□□□ 0.56
CLK3-227ENST00000570296 TULP2O00295 520 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 GCATO75600 419 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 RPLP0P05388 317 aaKnown RBP18.53■□□□□ 0.56
CLK3-227ENST00000570296 ANXA6P08133 673 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 ITIH1P19827 911 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 GJB2P29033 226 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 ADKP55263 362 aaKnown RBP18.53■□□□□ 0.56
CLK3-227ENST00000570296 C1QBPQ07021 282 aaKnown RBP18.53■□□□□ 0.56
CLK3-227ENST00000570296 PDE1CQ14123 709 aaPredicted RBP18.53■□□□□ 0.56
CLK3-227ENST00000570296 KNOP1Q1ED39 458 aaKnown RBP18.53■□□□□ 0.56
CLK3-227ENST00000570296 ACCSLQ4AC99 568 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 SLC4A11Q8NBS3 891 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 TMEM174Q8WUU8 243 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 USP7Q93009 1102 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 EPAS1Q99814 870 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 APOBEC3BQ9UH17 382 aaKnown RBP18.53■□□□□ 0.56
CLK3-227ENST00000570296 CLIC4Q9Y696 253 aa18.53■□□□□ 0.56
CLK3-227ENST00000570296 A0A1W2PQM1 296 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 C9orf172C9J069 976 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 MTSS1O43312 755 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 TNFRSF8P28908 595 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 ATP1A2P50993 1020 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 EIF2B5Q13144 721 aaKnown RBP18.52■□□□□ 0.56
CLK3-227ENST00000570296 DLG2Q15700 870 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 PRRT3Q5FWE3 981 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 Q6ZVU0 165 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 SLC9A9Q8IVB4 645 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 ARL10Q8N8L6 244 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 KCTD13Q8WZ19 329 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 TATDN2Q93075 761 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 CCDC74AQ96AQ1 378 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 FCRL2Q96LA5 508 aaPredicted RBP18.52■□□□□ 0.56
CLK3-227ENST00000570296 SLC17A9Q9BYT1 436 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 DYRK4Q9NR20 520 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 DMAC2Q9NW81 257 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 RABGEF1Q9UJ41 708 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 SLC25A13Q9UJS0 675 aa18.52■□□□□ 0.56
CLK3-227ENST00000570296 F8P00451 2351 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 STMND1H3BQB6 276 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 KPNA3O00505 521 aaPredicted RBP18.51■□□□□ 0.55
CLK3-227ENST00000570296 SPINT1O43278 529 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 PDGFRAP16234 1089 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 ETV5P41161 510 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 RAD23BP54727 409 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 DAOAP59103 153 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 RPS21P63220 83 aaKnown RBP18.51■□□□□ 0.55
CLK3-227ENST00000570296 CCL7P80098 99 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 AMPD3Q01432 767 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 BST2Q10589 180 aaKnown RBP18.51■□□□□ 0.55
CLK3-227ENST00000570296 KLRB1Q12918 225 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 TMEM164Q5U3C3 297 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 KIAA1161Q6NSJ0 714 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 RBFAQ8N0V3 343 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 LGI2Q8N0V4 545 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 SDR16C5Q8N3Y7 309 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 PDILTQ8N807 584 aa18.51■□□□□ 0.55
CLK3-227ENST00000570296 TMIEQ8NEW7 156 aa18.51■□□□□ 0.55
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms