RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TSGA13Q96PP4 275 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 OSBPL9Q96SU4 736 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 GABRG3Q99928 467 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 FAM118BQ9BPY3 351 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 LMAN1LQ9HAT1 526 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 PRDM16Q9HAZ2 1276 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 ATP13A1Q9HD20 1204 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 CACNA2D2Q9NY47 1150 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 LHX3Q9UBR4 397 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 VPS28Q9UK41 221 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 TTC7AQ9ULT0 858 aaPredicted RBP9.49□□□□□ -0.89
VPS35-211ENST00000569950 SNX12Q9UMY4 172 aa9.49□□□□□ -0.89
VPS35-211ENST00000569950 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.49□□□□□ -0.89
VPS35-211ENST00000569950 LRRK1Q38SD2 2015 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 FAM86C2PA6NEL3 165 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 APOC4-APOC2K7ER74 178 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 APOL1O14791 398 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 DAPK3O43293 454 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 GJB3O75712 270 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 APOC2P02655 101 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 DCNP07585 359 aaKnown RBP9.48□□□□□ -0.89
VPS35-211ENST00000569950 HLA-EP13747 358 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 TGM2P21980 687 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 DEKP35659 375 aaKnown RBP9.48□□□□□ -0.89
VPS35-211ENST00000569950 SERPINH1P50454 418 aaKnown RBP9.48□□□□□ -0.89
VPS35-211ENST00000569950 NRLP54845 237 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 SEC13P55735 322 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 OXCT1P55809 520 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 ECT2LQ008S8 904 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 PPIDQ08752 370 aaKnown RBP9.48□□□□□ -0.89
VPS35-211ENST00000569950 SLC10A7Q0GE19 358 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 MTAPQ13126 283 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 CYTH1Q15438 398 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 KAZNQ674X7 775 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 MAMSTRQ6ZN01 415 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 ZSCAN30Q86W11 494 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 CREG2Q8IUH2 290 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 CCDC50Q8IVM0 306 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 CNTD1Q8N815 330 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 ZNF366Q8N895 744 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 ZNF513Q8N8E2 541 aaPredicted RBP9.48□□□□□ -0.89
VPS35-211ENST00000569950 KDM1BQ8NB78 822 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 RPLP0P6Q8NHW5 317 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 KCNV2Q8TDN2 545 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 ATG4AQ8WYN0 398 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 PTPRN2Q92932 1015 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 FATE1Q969F0 183 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 ACDQ96AP0 544 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 HAUS1Q96CS2 278 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 HDAC11Q96DB2 347 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 NELL2Q99435 816 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 LGMNQ99538 433 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 CIPCQ9C0C6 399 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 MUC3BQ9H195 1237 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 C10orf88Q9H8K7 445 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 IPO11Q9UI26 975 aaKnown RBP9.48□□□□□ -0.89
VPS35-211ENST00000569950 STON1Q9Y6Q2 735 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 MYO15AQ9UKN7 3530 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 BPTFQ12830 3046 aa9.48□□□□□ -0.89
VPS35-211ENST00000569950 USP34Q70CQ2 3546 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 MYLKQ15746 1914 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 ARHGAP42A6NI28 874 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 K7ESF4 209 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 CBX4O00257 560 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 DFFAO00273 331 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 TIMM44O43615 452 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 KLF8O95600 359 aaPredicted RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 ASLP04424 464 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 SRPRAP08240 638 aaKnown RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 PRLRP16471 622 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 POLR2EP19388 210 aaKnown RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 CR2P20023 1033 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 SERPINB6P35237 376 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 TIE1P35590 1138 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 WASP42768 502 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 CLCN5P51795 746 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 COPAP53621 1224 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 MRPS21P82921 87 aaKnown RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 OTUD4Q01804 1114 aaKnown RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 IL10RBQ08334 325 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 WASHC5Q12768 1159 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 ZBTB17Q13105 803 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 CAMK2GQ13555 558 aaPredicted RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 TFDP2Q14188 446 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 OASLQ15646 514 aaKnown RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 HNRNPA1L2Q32P51 320 aaKnown RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 FBXO43Q4G163 708 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 C9orf64Q5T6V5 341 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 SYT10Q6XYQ8 523 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 SYNPOQ8N3V7 929 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 TEX26Q8N6G2 289 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 PRELID2Q8N945 189 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 TXNDC5Q8NBS9 432 aaKnown RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 C16orf45Q96MC5 204 aaPredicted RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 QKIQ96PU8 341 aaKnown RBP eCLIP9.47□□□□□ -0.896e-6■■■■□ 20.5
VPS35-211ENST00000569950 IL12RB2Q99665 862 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 NAPGQ99747 312 aaPredicted RBP9.47□□□□□ -0.89
VPS35-211ENST00000569950 GORASP1Q9BQQ3 440 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 SPON2Q9BUD6 331 aa9.47□□□□□ -0.89
VPS35-211ENST00000569950 C2orf49Q9BVC5 232 aaPredicted RBP9.47□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms