RNA–Protein interactions for RNA: ENST00000568612.5

VPS35-208, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-208ENST00000568612 INO80B-WBP1J3KQ70 363 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 K7ESF4 209 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 AGPSO00116 658 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 VWA5AO00534 786 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 RNASET2O00584 256 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 TRDMT1O14717 391 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 IKBKBO14920 756 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ZNF185O15231 689 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MAPK13O15264 365 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PJA2O43164 708 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PPIP5K2O43314 1243 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 NDUFA2O43678 99 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ZBTB14O43829 449 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PEX1O43933 1283 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 STX10O60499 249 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 RANBP6O60518 1105 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 NDUFS2O75306 463 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GPR32O75388 356 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 TJP3O95049 919 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SNX4O95219 450 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 POMCP01189 267 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SLC4A1P02730 911 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 FYNP06241 537 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PAEPP09466 180 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 RHOXF2BP0C7M4 288 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 DLATP10515 647 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 NQO1P15559 274 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 GNAZP19086 355 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 FPR1P21462 350 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 NR4A1P22736 598 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SFPQP23246 707 aaKnown RBP eCLIP3.36□□□□□ -1.87
VPS35-208ENST00000568612 PHBP35232 272 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SLC26A3P40879 764 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SLC1A1P43005 524 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PTPN9P43378 593 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ALDH1A3P47895 512 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GSSP48637 474 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 HSPA13P48723 471 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ARFIP2P53365 341 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SLC16A1P53985 500 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 C21orf58P58505 322 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 RPP38P78345 283 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 FAM189BP81408 668 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PPP2R2BQ00005 443 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 CREMQ03060 361 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ACY1Q03154 408 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SLFN5Q08AF3 891 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GOLGA8FQ08AF8 430 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GOLGA8DPQ0D2H9 430 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MGAT2Q10469 447 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 IDI1Q13907 227 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 CSRP2Q16527 193 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PTPN21Q16825 1174 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 FUT11Q495W5 492 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ANO6Q4KMQ2 910 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 LY6G5CQ5SRR4 150 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 CLVS2Q5SYC1 327 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 CCNJQ5T5M9 372 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 OR7E24Q6IFN5 339 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SPOPLQ6IQ16 392 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 FAM180BQ6P0A1 224 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 DRICH1Q6PGQ1 229 aaPredicted RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 KIF6Q6ZMV9 814 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 IKBIPQ70UQ0 350 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ZNF627Q7L945 461 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GPRIN1Q7Z2K8 1008 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MRGPREQ86SM8 312 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 DPP9Q86TI2 863 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 AKAP14Q86UN6 197 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 GATAD2AQ86YP4 633 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PLXDC1Q8IUK5 500 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 RAVER1Q8IY67 606 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.36□□□□□ -1.87
VPS35-208ENST00000568612 ELMOD1Q8N336 334 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 BBS5Q8N3I7 341 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 TMEM57Q8N5G2 664 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 CPSF7Q8N684 471 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 NATD1Q8N6N6 113 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 PPHLN1Q8NEY8 458 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 OR2I1PQ8NGU4 316 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 EXD1Q8NHP7 514 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 DDX55Q8NHQ9 600 aaKnown RBP eCLIP3.36□□□□□ -1.87
VPS35-208ENST00000568612 OTUD7AQ8TE49 926 aaPredicted RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 FBXO41Q8TF61 875 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 NAT14Q8WUY8 206 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 HSPH1Q92598 858 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 JADE3Q92613 823 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 RRP36Q96EU6 259 aaKnown RBP3.36□□□□□ -1.87
VPS35-208ENST00000568612 CNDP1Q96KN2 507 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 CEP170P1Q96L14 293 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ART5Q96L15 291 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 TTC25Q96NG3 672 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 CDRT15Q96T59 188 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MYOCQ99972 504 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 RHOXF2Q9BQY4 288 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 ISCA1Q9BUE6 129 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 MLST8Q9BVC4 326 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 CCDC106Q9BWC9 280 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 SLC46A2Q9BY10 475 aa3.36□□□□□ -1.87
VPS35-208ENST00000568612 TEX101Q9BY14 249 aa3.36□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms