RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 DNASE2BQ8WZ79 361 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 RMDN1Q96DB5 314 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 DNAJC7Q99615 494 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 TRIM5Q9C035 493 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 CEP44Q9C0F1 390 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 ARHGAP20Q9P2F6 1191 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 DNAI1Q9UI46 699 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 FZD4Q9ULV1 537 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 TPX2Q9ULW0 747 aaKnown RBP13.7□□□□□ -0.22
CLK3-213ENST00000563842 SLC6A14Q9UN76 642 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 AP4E1Q9UPM8 1137 aa13.7□□□□□ -0.22
CLK3-213ENST00000563842 ASCC3Q8N3C0 2202 aaKnown RBP13.7□□□□□ -0.22
CLK3-213ENST00000563842 KNL1Q8NG31 2342 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 ZSCAN5CA6NGD5 496 aaPredicted RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 LRRC72A6NJI9 287 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 WASH4PA8MWX3 477 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 SLC30A4O14863 429 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 RNASEH2AO75792 299 aaKnown RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 SERPINF2P08697 491 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 ACSL1P33121 698 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 EIF4A3P38919 411 aaKnown RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 PSMD8P48556 350 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 YBEYP58557 167 aaPredicted RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 TPI1P60174 286 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 SLC18A3Q16572 532 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 DCAF12L1Q5VU92 463 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 DNAAF5Q86Y56 855 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 PYROXD2Q8N2H3 581 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 HDDC3Q8N4P3 179 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 RTL3Q8N8U3 475 aaKnown RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 ARHGEF2Q92974 986 aaKnown RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 EDEM2Q9BV94 578 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 ACE2Q9BYF1 805 aaPredicted RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 THAP2Q9H0W7 228 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 SMOC1Q9H4F8 434 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 DHX35Q9H5Z1 703 aaKnown RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 ABHD10Q9NUJ1 306 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 TMEM74BQ9NUR3 256 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 PCSK1NQ9UHG2 260 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 IP6K2Q9UHH9 426 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 LCMT1Q9UIC8 334 aa13.69□□□□□ -0.22
CLK3-213ENST00000563842 CNOT1A5YKK6 2376 aaKnown RBP13.69□□□□□ -0.22
CLK3-213ENST00000563842 DMXL1Q9Y485 3027 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 A0A1B0GTW7 788 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 A0A1W2PP55 124 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 MYO1FO00160 1098 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 SLC7A4O43246 635 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 DAPK3O43293 454 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 AKR1B10O60218 316 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 BNIP3LO60238 219 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 GDF9O60383 454 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 ZMPSTE24O75844 475 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 MT-CO1P00395 513 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 PRNPP04156 253 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 CFIP05156 583 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 CYP1A2P05177 515 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 SYPP08247 313 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 H2AFZP0C0S5 128 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 GOT1P17174 413 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 MIPP30301 263 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 SERPINH1P50454 418 aaKnown RBP13.68□□□□□ -0.22
CLK3-213ENST00000563842 ATXN3P54252 364 aaPredicted RBP13.68□□□□□ -0.22
CLK3-213ENST00000563842 IRX4P78413 519 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 GFPT1Q06210 699 aaPredicted RBP13.68□□□□□ -0.22
CLK3-213ENST00000563842 ZNF252P-AS1Q0IIN9 211 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 SEMA3BQ13214 749 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 MAPK8IP2Q13387 824 aaPredicted RBP13.68□□□□□ -0.22
CLK3-213ENST00000563842 BOLA3Q53S33 107 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 STPG1Q5TH74 334 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 DAB2IPQ5VWQ8 1189 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 TCEAL6Q6IPX3 200 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 C22orf39Q6P5X5 142 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 Q6ZVU0 165 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 H2AFVQ71UI9 128 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 ZNF354CQ86Y25 554 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 PCDH20Q8N6Y1 951 aaKnown RBP13.68□□□□□ -0.22
CLK3-213ENST00000563842 CTNNBL1Q8WYA6 563 aaPredicted RBP13.68□□□□□ -0.22
CLK3-213ENST00000563842 TCEAL3Q969E4 200 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 ISG20Q96AZ6 181 aaKnown RBP13.68□□□□□ -0.22
CLK3-213ENST00000563842 CCDC42Q96M95 316 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 NUP85Q9BW27 656 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 MAGEB5Q9BZ81 275 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 NEUROG2Q9H2A3 272 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 KDM4CQ9H3R0 1056 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 ANAPC7Q9UJX3 599 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 NEU3Q9UQ49 428 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 DOCK9Q9BZ29 2069 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 KMT2BQ9UMN6 2715 aaPredicted RBP13.68□□□□□ -0.22
CLK3-213ENST00000563842 TRPM6Q9BX84 2022 aa13.68□□□□□ -0.22
CLK3-213ENST00000563842 ATXN2Q99700 1313 aaKnown RBP13.67□□□□□ -0.22
CLK3-213ENST00000563842 TP53BP1Q12888 1972 aaPredicted RBP13.67□□□□□ -0.22
CLK3-213ENST00000563842 LNP1A1A4G5 178 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 PATE3B3GLJ2 98 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 AKR1B15C9JRZ8 316 aaPredicted RBP13.67□□□□□ -0.22
CLK3-213ENST00000563842 EEF2KO00418 725 aaKnown RBP13.67□□□□□ -0.22
CLK3-213ENST00000563842 KDELR3O43731 214 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 MFAP3LO75121 409 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 LRCH4O75427 683 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 VAV1P15498 845 aa13.67□□□□□ -0.22
CLK3-213ENST00000563842 GLDCP23378 1020 aa13.67□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms