RNA–Protein interactions for RNA: ENST00000561026.5

SNX1-213, Transcript of sorting nexin 1, humanhuman

TSL 1 (best) BASIC

Gene SNX1, Length 1,374 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-213ENST00000561026 TAB2Q9NYJ8 693 aa16.62■□□□□ 0.25
SNX1-213ENST00000561026 FTSJ1Q9UET6 329 aa16.62■□□□□ 0.25
SNX1-213ENST00000561026 DMTF1Q9Y222 760 aa16.62■□□□□ 0.25
SNX1-213ENST00000561026 FARP1Q9Y4F1 1045 aaPredicted RBP16.62■□□□□ 0.25
SNX1-213ENST00000561026 NYNRINQ9P2P1 1898 aaKnown RBP16.61■□□□□ 0.25
SNX1-213ENST00000561026 E9PAM4 449 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 ITGAVP06756 1048 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 CTSLP07711 333 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 CHRNA3P32297 505 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 CLCN6P51797 869 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 TAS2R38P59533 333 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 CLEC17AQ6ZS10 378 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 IQCHQ86VS3 1027 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 TMIEQ8NEW7 156 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 CCDC114Q96M63 670 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 GANQ9H2C0 597 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 CCDC86Q9H6F5 360 aaKnown RBP16.61■□□□□ 0.25
SNX1-213ENST00000561026 PREBQ9HCU5 417 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 NOCTQ9UK39 431 aaKnown RBP16.61■□□□□ 0.25
SNX1-213ENST00000561026 PTPRBP23467 1997 aa16.61■□□□□ 0.25
SNX1-213ENST00000561026 GOLGA4Q13439 2230 aaKnown RBP16.61■□□□□ 0.25
SNX1-213ENST00000561026 ILVBLA1L0T0 632 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 SMAD6O43541 496 aaKnown RBP16.6■□□□□ 0.25
SNX1-213ENST00000561026 SRGAP2O75044 1071 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 RRM1P23921 792 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 RXRGP48443 463 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 OVGP1Q12889 678 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 SMAD1Q15797 465 aaKnown RBP16.6■□□□□ 0.25
SNX1-213ENST00000561026 CCDC157Q569K6 752 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 PIP5KL1Q5T9C9 394 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 LINGO4Q6UY18 593 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 ZNF783Q6ZMS7 281 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 ZNF677Q86XU0 584 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 SPATS2Q86XZ4 545 aaKnown RBP16.6■□□□□ 0.25
SNX1-213ENST00000561026 MARCH9Q86YJ5 346 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 VPS16Q9H269 839 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 LMBRD1Q9NUN5 540 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 ZNF212Q9UDV6 495 aa16.6■□□□□ 0.25
SNX1-213ENST00000561026 ACACAQ13085 2346 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 KNTC1P50748 2209 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 PRAMEF26H0Y7S4 382 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 MAGEC1O60732 1142 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 GFPT2O94808 682 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 ENDOD1O94919 500 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 CYP1A1P04798 512 aaPredicted RBP16.59■□□□□ 0.25
SNX1-213ENST00000561026 GLDCP23378 1020 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 EPHA8P29322 1005 aaPredicted RBP16.59■□□□□ 0.25
SNX1-213ENST00000561026 CDR2Q01850 454 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 CCDC15Q0P6D6 951 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 STAT4Q14765 748 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 SETMARQ53H47 684 aaPredicted RBP16.59■□□□□ 0.25
SNX1-213ENST00000561026 CDKAL1Q5VV42 579 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 NEK5Q6P3R8 708 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 DHRS13Q6UX07 377 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 FAM131BQ86XD5 332 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 OXR1Q8N573 874 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 OR7D4Q8NG98 312 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 SLC20A1Q8WUM9 679 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 ZYG11BQ9C0D3 744 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 PCDHGA1Q9Y5H4 931 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 APC2O95996 2303 aa16.59■□□□□ 0.25
SNX1-213ENST00000561026 CBX4O00257 560 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 KPNA3O00505 521 aaPredicted RBP16.58■□□□□ 0.24
SNX1-213ENST00000561026 ENC1O14682 589 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 LDOC1O95751 146 aaPredicted RBP16.58■□□□□ 0.24
SNX1-213ENST00000561026 PRNPP04156 253 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 MMP8P22894 467 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 KLK7P49862 253 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 POLR2FP61218 127 aaKnown RBP16.58■□□□□ 0.24
SNX1-213ENST00000561026 ATP11AP98196 1134 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 FMO1Q01740 532 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 SLC20A2Q08357 652 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 BNIP3Q12983 259 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 KRT31Q15323 416 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 RETSATQ6NUM9 610 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 EID2Q8N6I1 236 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 EMC1Q8N766 993 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 CHST14Q8NCH0 376 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 MDM1Q8TC05 714 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 ARRDC3Q96B67 414 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 CNDP2Q96KP4 475 aaKnown RBP16.58■□□□□ 0.24
SNX1-213ENST00000561026 SPON2Q9BUD6 331 aa16.58■□□□□ 0.24
SNX1-213ENST00000561026 METTL5Q9NRN9 209 aaKnown RBP16.58■□□□□ 0.24
SNX1-213ENST00000561026 FAM207AQ9NSI2 230 aaPredicted RBP16.58■□□□□ 0.24
SNX1-213ENST00000561026 PPARGC1AQ9UBK2 798 aaKnown RBP16.58■□□□□ 0.24
SNX1-213ENST00000561026 FAM149AA5PLN7 773 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 TRABD2BA6NFA1 517 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 RNF103O00237 685 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 EPHB6O15197 1021 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 RNGTTO60942 597 aaKnown RBP16.57■□□□□ 0.24
SNX1-213ENST00000561026 ZNF821O75541 412 aaPredicted RBP16.57■□□□□ 0.24
SNX1-213ENST00000561026 ZMPSTE24O75844 475 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 TPM2P07951 284 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 CHRNB2P17787 502 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 SOX5P35711 763 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 RECQLP46063 649 aaPredicted RBP16.57■□□□□ 0.24
SNX1-213ENST00000561026 JAM2P57087 298 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 GNA12Q03113 381 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 CAMK2BQ13554 666 aa16.57■□□□□ 0.24
SNX1-213ENST00000561026 CCDC14Q49A88 953 aa16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms