RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LSMEM2Q8N112 164 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 SLC25A45Q8N413 288 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 TMEM145Q8NBT3 493 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 C1orf131Q8NDD1 294 aaKnown RBP9.4□□□□□ -0.9
HDDC3-204ENST00000559834 OR4C6Q8NH72 309 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 IFT43Q96FT9 208 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 CRELD1Q96HD1 420 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 PPP1R16AQ96I34 528 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 CPXM1Q96SM3 734 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 ABCG4Q9H172 646 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 ACP6Q9NPH0 428 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 APEX2Q9UBZ4 518 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 STAP1Q9ULZ2 295 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 HS3ST4Q9Y661 456 aa9.4□□□□□ -0.9
HDDC3-204ENST00000559834 PLXNA2O75051 1894 aa9.4□□□□□ -0.91
HDDC3-204ENST00000559834 ARID1BQ8NFD5 2236 aaPredicted RBP9.39□□□□□ -0.91
HDDC3-204ENST00000559834 TEX51A0A1B0GUA7 166 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 CAPN8A6NHC0 703 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 BECN2A8MW95 431 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 BRINP1O60477 761 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 DAB1O75553 588 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 MT-CO1P00395 513 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 CKMT1AP12532 417 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 SRCP12931 536 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 SLC9A1P19634 815 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 TAS2R38P59533 333 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 RNASE9P60153 205 aaKnown RBP9.39□□□□□ -0.91
HDDC3-204ENST00000559834 SLC20A2Q08357 652 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 EXOC3L4Q17RC7 722 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 TBC1D25Q3MII6 688 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 PIP5KL1Q5T9C9 394 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 GJB7Q6PEY0 223 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 OLFML1Q6UWY5 402 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 KDM7AQ6ZMT4 941 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 FAM183BPQ6ZVS7 135 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 ERN2Q76MJ5 926 aaKnown RBP9.39□□□□□ -0.91
HDDC3-204ENST00000559834 PASD1Q8IV76 773 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 ZNF397Q8NF99 534 aaPredicted RBP9.39□□□□□ -0.91
HDDC3-204ENST00000559834 OR52K2Q8NGK3 314 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 OR2A12Q8NGT7 310 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 SHC3Q92529 594 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 KLK6Q92876 244 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 FEM1CQ96JP0 617 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 C1orf74Q96LT6 269 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 ZNF578Q96N58 590 aaPredicted RBP9.39□□□□□ -0.91
HDDC3-204ENST00000559834 FCRL3Q96P31 734 aaPredicted RBP9.39□□□□□ -0.91
HDDC3-204ENST00000559834 DEPDC7Q96QD5 511 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 DUSP23Q9BVJ7 150 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 CALN1Q9BXU9 219 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 HDAC8Q9BY41 377 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 TKTL2Q9H0I9 626 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 PDCL3Q9H2J4 239 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 USP29Q9HBJ7 922 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 ARHGEF38Q9NXL2 777 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP9.39□□□□□ -0.91
HDDC3-204ENST00000559834 RWDD2AQ9UIY3 292 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 CA5BQ9Y2D0 317 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 RAI2Q9Y5P3 530 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 HS3ST3A1Q9Y663 406 aa9.39□□□□□ -0.91
HDDC3-204ENST00000559834 SPEGQ15772 3267 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 GTPBP10A4D1E9 387 aaKnown RBP9.38□□□□□ -0.91
HDDC3-204ENST00000559834 DRGXA6NNA5 263 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 RIOK3O14730 519 aaKnown RBP9.38□□□□□ -0.91
HDDC3-204ENST00000559834 SCAMP1O15126 338 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 FFAR2O15552 330 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 OPA1O60313 960 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 SNAP91O60641 907 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 PIAS2O75928 621 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 ERBB2P04626 1255 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 GP1BAP07359 652 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 PRLRP16471 622 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 OR1E1P30953 314 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 CXCR3P49682 368 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 IRAK1P51617 712 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 HNRNPKP61978 463 aaKnown RBP eCLIP9.38□□□□□ -0.91
HDDC3-204ENST00000559834 RPS21P63220 83 aaKnown RBP9.38□□□□□ -0.91
HDDC3-204ENST00000559834 DEUP1Q05D60 604 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 CCDC173Q0VFZ6 552 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 ZNF284Q2VY69 593 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 ARSIQ5FYB1 569 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 BROXQ5VW32 411 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 RETSATQ6NUM9 610 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 ZNF783Q6ZMS7 281 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 Q6ZSR6 202 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 TMC6Q7Z403 805 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 C14orf80Q86SX3 495 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 ZSCAN30Q86W11 494 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 DCAF4L2Q8NA75 395 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 TMEM35BQ8NCS4 154 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 ZNF248Q8NDW4 579 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 PGAP3Q96FM1 320 aaPredicted RBP9.38□□□□□ -0.91
HDDC3-204ENST00000559834 PSMB7Q99436 277 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 NPY6RQ99463 290 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 MYOCQ99972 504 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 SPON2Q9BUD6 331 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 SLC17A9Q9BYT1 436 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 NLGN3Q9NZ94 848 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 NCKIPSDQ9NZQ3 722 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 IL36AQ9UHA7 158 aa9.38□□□□□ -0.91
HDDC3-204ENST00000559834 IPO11Q9UI26 975 aaKnown RBP9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms