RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 LLGL1Q15334 1064 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 IFI16Q16666 785 aaKnown RBP14.64□□□□□ -0.07
USP3-205ENST00000557884 ODF2Q5BJF6 829 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 ANKRD20A8PQ5CZ79 823 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 AFMIDQ63HM1 303 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 ZC3H14Q6PJT7 736 aaKnown RBP14.64□□□□□ -0.07
USP3-205ENST00000557884 ARHGAP36Q6ZRI8 547 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 STK40Q8N2I9 435 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 ZBTB44Q8NCP5 570 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 OR2T3Q8NH03 318 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 PCDH19Q8TAB3 1148 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 RLN3Q8WXF3 142 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 KRT35Q92764 455 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 PTPRN2Q92932 1015 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 RNF25Q96BH1 459 aaPredicted RBP14.64□□□□□ -0.07
USP3-205ENST00000557884 TNKS2Q9H2K2 1166 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 KCNF1Q9H3M0 494 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 PRDM16Q9HAZ2 1276 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 CD93Q9NPY3 652 aa14.64□□□□□ -0.07
USP3-205ENST00000557884 DDX56Q9NY93 547 aaKnown RBP14.64□□□□□ -0.07
USP3-205ENST00000557884 FCF1Q9Y324 198 aaKnown RBP14.64□□□□□ -0.07
USP3-205ENST00000557884 TARSL2A2RTX5 802 aaKnown RBP14.63□□□□□ -0.07
USP3-205ENST00000557884 ARHGAP42A6NI28 874 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 C3orf70A6NLC5 250 aaPredicted RBP14.63□□□□□ -0.07
USP3-205ENST00000557884 J3KR12 359 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 HRO43593 1189 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 PALMO75781 387 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 CD160O95971 181 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 CCDC175P0C221 793 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 VASPP50552 380 aaPredicted RBP14.63□□□□□ -0.07
USP3-205ENST00000557884 DNA2P51530 1060 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 NHLH1Q02575 133 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 C22orf39Q6P5X5 142 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 MFSD7Q6UXD7 560 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 FAM160A2Q8N612 972 aaPredicted RBP14.63□□□□□ -0.07
USP3-205ENST00000557884 LZTR1Q8N653 840 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 PQLC3Q8N755 202 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 LRRC57Q8N9N7 239 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 KIAA1524Q8TCG1 905 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 PRCCQ92733 491 aaPredicted RBP14.63□□□□□ -0.07
USP3-205ENST00000557884 SIPA1Q96FS4 1042 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 CALR3Q96L12 384 aaKnown RBP14.63□□□□□ -0.07
USP3-205ENST00000557884 PHOX2BQ99453 314 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 TSGA10Q9BZW7 698 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 LZTFL1Q9NQ48 299 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 GUCA1BQ9UMX6 200 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 CYP8B1Q9UNU6 501 aa14.63□□□□□ -0.07
USP3-205ENST00000557884 MUC22E2RYF6 1773 aaPredicted RBP14.62□□□□□ -0.07
USP3-205ENST00000557884 CCDC163A0A0D9SF12 145 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 MFSD11O43934 449 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 RPP40O75818 363 aaKnown RBP14.62□□□□□ -0.07
USP3-205ENST00000557884 MAP3K6O95382 1288 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 FTCDO95954 541 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 PSMD8P48556 350 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 CLCN6P51797 869 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 GEMIN4P57678 1058 aaKnown RBP14.62□□□□□ -0.07
USP3-205ENST00000557884 RPS14P62263 151 aaKnown RBP14.62□□□□□ -0.07
USP3-205ENST00000557884 SLC20A2Q08357 652 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 USP39Q53GS9 565 aaKnown RBP14.62□□□□□ -0.07
USP3-205ENST00000557884 ZNF776Q68DI1 518 aaPredicted RBP14.62□□□□□ -0.07
USP3-205ENST00000557884 NCBP2-AS2Q69YL0 99 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 PRR23BQ6ZRT6 265 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 CEP68Q76N32 757 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 MMAAQ8IVH4 418 aaKnown RBP14.62□□□□□ -0.07
USP3-205ENST00000557884 FRMD1Q8N878 549 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 FAF2Q96CS3 445 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 FAM129BQ96TA1 746 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 TM6SF2Q9BZW4 377 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 SP110Q9HB58 689 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 UBA2Q9UBT2 640 aaPredicted RBP14.62□□□□□ -0.07
USP3-205ENST00000557884 PPP2R2CQ9Y2T4 447 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 CAPN6Q9Y6Q1 641 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 FRYLO94915 3013 aa14.62□□□□□ -0.07
USP3-205ENST00000557884 ZSCAN5CA6NGD5 496 aaPredicted RBP14.61□□□□□ -0.07
USP3-205ENST00000557884 KRT86O43790 486 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 PRAMEF11O60813 436 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 RNASEH1O60930 286 aaKnown RBP14.61□□□□□ -0.07
USP3-205ENST00000557884 LILRB5O75023 590 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 ZNF821O75541 412 aaPredicted RBP14.61□□□□□ -0.07
USP3-205ENST00000557884 TMCC1O94876 653 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 ACADMP11310 421 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 BCKDHBP21953 392 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 SERPINB6P35237 376 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 DYNLT1P63172 113 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 GBE1Q04446 702 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 SIM2Q14190 667 aaPredicted RBP14.61□□□□□ -0.07
USP3-205ENST00000557884 LPAL2Q16609 132 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 MAP7D1Q3KQU3 841 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 POM121L1PQ3SYA9 428 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 PEX26Q7Z412 305 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 RFX6Q8HWS3 928 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 KATNAL2Q8IYT4 538 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 ATPAF2Q8N5M1 289 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 CHST14Q8NCH0 376 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 OR2A12Q8NGT7 310 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 TRAF3IP1Q8TDR0 691 aaPredicted RBP14.61□□□□□ -0.07
USP3-205ENST00000557884 GAB3Q8WWW8 586 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 OR8D1Q8WZ84 308 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 RNF157Q96PX1 679 aa14.61□□□□□ -0.07
USP3-205ENST00000557884 MAK16Q9BXY0 300 aaKnown RBP14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms